6DU4

Crystal structure of hMettl16 catalytic domain in complex with MAT2A 3'UTR hairpin 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.152 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Basis for Regulation of METTL16, an S-Adenosylmethionine Homeostasis Factor.

Doxtader, K.A.Wang, P.Scarborough, A.M.Seo, D.Conrad, N.K.Nam, Y.

(2018) Mol. Cell 71: 1001-1011.e4


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
A
313Homo sapiensMutation(s): 0 
Gene Names: METTL16 (METT10D)
EC: 2.1.1.346
Find proteins for Q86W50 (Homo sapiens)
Go to Gene View: METTL16
Go to UniProtKB:  Q86W50
Entity ID: 2
MoleculeChainsLengthOrganism
hp1x-RNA (29-MER)B29Homo sapiens
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
TRS
Query on TRS

Download SDF File 
Download CCD File 
A, B
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.152 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 74.979α = 90.00
b = 74.979β = 90.00
c = 93.213γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
MOLREPphasing
HKL-3000data scaling
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
United States--

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-03
    Type: Data collection, Database references