6DTA

Bacteriophage N4 RNA polymerase II elongation complex 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.694 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Bacteriophage N4 RNA polymerase II elongation complex 2

Molodtsov, V.Murakami, K.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNAP1
A
269Enterobacteria phage N4Mutation(s): 0 
Find proteins for Q8LTE4 (Enterobacteria phage N4)
Go to UniProtKB:  Q8LTE4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
RNAP2
B
404Enterobacteria phage N4Mutation(s): 0 
Find proteins for Q8LTE3 (Enterobacteria phage N4)
Go to UniProtKB:  Q8LTE3
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3')C48synthetic construct
Entity ID: 4
MoleculeChainsLengthOrganism
RNA (5'-R(*UP*UP*GP*GP*UP*GP*G)-3')D8synthetic construct
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP

Download SDF File 
Download CCD File 
B
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
B, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.694 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.191 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 175.049α = 90.00
b = 175.049β = 90.00
c = 76.598γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01GM087350

Revision History 

  • Version 1.0: 2018-07-11
    Type: Initial release