6DPY

X-ray crystal structure of AmpC beta-lactamase with inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Ultra-large library docking for new chemotypes

Lyu, J.Wang, S.Balius, T.E.Singh, I.Levit, A.Moroz, Y.S.O'Meara, M.J.Algaa, E.Tolmachov, A.A.Shoicht, B.K.Roth, B.L.Irwin, J.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B
358Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: ampC (ampA)
EC: 3.5.2.6
Find proteins for P00811 (Escherichia coli (strain K12))
Go to UniProtKB:  P00811
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
H7A
Query on H7A

Download SDF File 
Download CCD File 
A, B
4-{[(4R)-6-fluoro-3,4-dihydro-2H-1-benzopyran-4-yl]sulfamoyl}-2,5-dimethylfuran-3-carboxylic acid
C16 H16 F N O6 S
YXLDXDUEWBKCKU-GFCCVEGCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 
  • Space Group: I 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 97.436α = 90.00
b = 77.562β = 113.13
c = 115.670γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
XDSdata reduction
PHENIXrefinement
PDB_EXTRACTdata extraction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-06-09 
  • Released Date: 2018-07-04 
  • Deposition Author(s): Singh, I.

Revision History 

  • Version 1.0: 2018-07-04
    Type: Initial release