6DPT

X-ray crystal structure of AmpC beta-lactamase with nanomolar inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.187 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Ultra-large library docking for new chemotypes

Lyu, J.Wang, S.Balius, T.E.Singh, I.Levit, A.Moroz, Y.S.O'Meara, M.J.Algaa, E.Tolmachov, A.A.Shoicht, B.K.Roth, B.L.Irwin, J.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B
358Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: ampC (ampA)
EC: 3.5.2.6
Find proteins for P00811 (Escherichia coli (strain K12))
Go to UniProtKB:  P00811
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
H7M
Query on H7M

Download SDF File 
Download CCD File 
A, B
3-chloro-2-hydroxy-N-{2-[(4-methyl-4H-1,2,4-triazol-3-yl)sulfanyl]phenyl}benzene-1-sulfonamide
C15 H13 Cl N4 O3 S2
DNTLDOPFKLUBET-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.187 
  • Space Group: I 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 98.166α = 90.00
b = 77.557β = 113.04
c = 115.510γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
MOLREPphasing
XDSdata reduction
PHENIXrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-06-09 
  • Released Date: 2018-07-04 
  • Deposition Author(s): Singh, I.

Revision History 

  • Version 1.0: 2018-07-04
    Type: Initial release