6DNW

Sequence Requirements of the Listeria innocua prophage attP site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.849 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.219 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Serine Integrase attP Binding and Specificity.

Li, H.Sharp, R.Rutherford, K.Gupta, K.Van Duyne, G.D.

(2018) J. Mol. Biol. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative integrase [Bacteriophage A118]
A
319Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)Mutation(s): 0 
Gene Names: int
Find proteins for Q928V6 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262))
Go to UniProtKB:  Q928V6
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (26-MER)B26Listeria innocua Clip11262
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (26-MER)C26Listeria innocua Clip11262
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.849 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.219 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.291α = 90.00
b = 57.112β = 90.00
c = 167.883γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited States5R01GM10875104

Revision History 

  • Version 1.0: 2018-10-03
    Type: Initial release