6DNQ

HBZ77 in complex with KIX and c-Myb


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.199 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis for cooperative regulation of KIX-mediated transcription pathways by the HTLV-1 HBZ activation domain.

Yang, K.Stanfield, R.L.Martinez-Yamout, M.A.Dyson, H.J.Wilson, I.A.Wright, P.E.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 10040-10045


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BZIP factor
E
79Human T-cell leukemia virus type IMutation(s): 0 
Gene Names: HBZ
Find proteins for Q2Q067 (Human T-cell leukemia virus type I)
Go to Gene View: HBZ
Go to UniProtKB:  Q2Q067
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Transcriptional activator Myb
C, A
32Mus musculusMutation(s): 0 
Gene Names: Myb
Find proteins for P06876 (Mus musculus)
Go to UniProtKB:  P06876
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
CREB-binding protein
D, B
88Mus musculusMutation(s): 0 
Gene Names: Crebbp (Cbp)
EC: 2.3.1.48
Find proteins for P45481 (Mus musculus)
Go to UniProtKB:  P45481
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
D
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.199 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 118.825α = 90.00
b = 51.166β = 126.41
c = 72.047γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
SCALEPACKdata scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesCA214054

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release
  • Version 1.1: 2018-10-03
    Type: Data collection, Database references
  • Version 1.2: 2018-10-17
    Type: Data collection, Database references