6DKL

Crystal Structure of a Rationally Designed Six-Fold Symmetric DNA Scaffold

  • Classification: DNA
  • Organism(s): synthetic construct

  • Deposited: 2018-05-29 Released: 2018-08-29 
  • Deposition Author(s): Simmons, C.R., Zhang, F., Yan, H.
  • Funding Organization(s): National Institutes of Health/National Human Genome Research Institute; National Science Foundation (United States) 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.034 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.228 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry.

Zhang, F.Simmons, C.R.Gates, J.Liu, Y.Yan, H.

(2018) Angew. Chem. Int. Ed. Engl. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(P*GP*GP*AP*TP*GP*CP*AP*CP*A)-3')A9synthetic construct
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*AP*CP*AP*CP*CP*GP*TP*AP*C)-3')B10synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*GP*TP*GP*CP*TP*GP*TP*GP*CP*T)-3')C11synthetic construct
Entity ID: 4
MoleculeChainsLengthOrganism
DNA (5'-D(P*GP*TP*AP*CP*GP*GP*AP*TP*CP*CP*AP*G)-3')D12synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.034 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.228 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 68.408α = 90.00
b = 68.408β = 90.00
c = 143.222γ = 120.00
Software Package:
Software NamePurpose
PHENIXphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesR01GM104960
National Science Foundation (United States)United States1360635

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release