6DJB

Structure of human Volume Regulated Anion Channel composed of SWELL1 (LRRC8A)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of the human volume regulated anion channel.

Kefauver, J.M.Saotome, K.Dubin, A.E.Pallesen, J.Cottrell, C.A.Cahalan, S.M.Qiu, Z.Hong, G.Crowley, C.S.Whitwam, T.Lee, W.H.Ward, A.B.Patapoutian, A.

(2018) Elife 7

  • DOI: https://doi.org/10.7554/eLife.38461
  • Primary Citation of Related Structures:  
    6DJB

  • PubMed Abstract: 

    SWELL1 (LRRC8A) is the only essential subunit of the Volume Regulated Anion Channel (VRAC), which regulates cellular volume homeostasis and is activated by hypotonic solutions. SWELL1, together with four other LRRC8 family members, potentially forms a vastly heterogeneous cohort of VRAC channels with different properties; however, SWELL1 alone is also functional. Here, we report a high-resolution cryo-electron microscopy structure of full-length human homo-hexameric SWELL1. The structure reveals a trimer of dimers assembly with symmetry mismatch between the pore-forming domain and the cytosolic leucine-rich repeat (LRR) domains. Importantly, mutational analysis demonstrates that a charged residue at the narrowest constriction of the homomeric channel is an important pore determinant of heteromeric VRAC. Additionally, a mutation in the flexible N-terminal portion of SWELL1 affects pore properties, suggesting a putative link between intracellular structures and channel regulation. This structure provides a scaffold for further dissecting the heterogeneity and mechanism of activation of VRAC.


  • Organizational Affiliation

    Department of Neuroscience, Howard Hughes Medical Institute, The Scripps Research Institute, La Jolla, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Volume-regulated anion channel subunit LRRC8A810Homo sapiensMutation(s): 0 
Gene Names: LRRC8AKIAA1437LRRC8SWELL1UNQ221/PRO247
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IWT6 (Homo sapiens)
Explore Q8IWT6 
Go to UniProtKB:  Q8IWT6
PHAROS:  Q8IWT6
GTEx:  ENSG00000136802 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IWT6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2.1b1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesR01 NS083174
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesF31 NS093778
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2018-08-15
    Type: Initial release
  • Version 1.1: 2018-08-22
    Changes: Data collection, Database references
  • Version 1.2: 2019-11-20
    Changes: Author supporting evidence
  • Version 1.3: 2019-12-18
    Changes: Other