Macromolecule Content

Total Structure Weight: 210804.27
Atom Count: 13158
Residue Count: 1892
Unique protein chains: 1

6DHI

Butelase 1: Auto-Catalytic Cleavage as an Evolutionary Constraint for Macrocyclizing Endopeptidases

DOI: 10.2210/pdb6DHI/pdb

Classification: PLANT PROTEIN Hydrolase
Organism(s): Clitoria ternatea
Expression System: Escherichia coli

Deposited: 2018-05-20 Released: 2018-08-15
Deposition Author(s): Bond, C.S., Haywood, J.
Funding Organization(s): Australian Research Council

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.1 Å
R-Value Free: 0.309
R-Value Work: 0.274

wwPDB Validation3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The macrocyclizing protease butelase 1 remains auto-catalytic and reveals the structural basis for ligase activity

James, A.M., Haywood, J., Leroux, J., Ignasiak, K., Elliot, A.G., Schmidberger, J.W., Fisher, M.F., Nonis, S.G., Fenske, R., Bond, C.S., Mylne, J.S.

(2018) Biorxiv --: --

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Asparaginyl endopeptidase	A, B, C, D	473	Clitoria ternatea	Mutation(s): 0 EC: 3.4.22.34
Find proteins for A0A060D9Z7 (Clitoria ternatea) Go to UniProtKB: A0A060D9Z7
Protein Feature View Full Protein Feature View for A0A060D9Z7

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
SNN Query on SNN	A, B, C, D	L-PEPTIDE LINKING	C₄ H₆ N₂ O₂		ASN

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.1 Å
R-Value Free: 0.309
R-Value Work: 0.274
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 71.360	α = 90.00
b = 147.687	β = 90.00
c = 183.334	γ = 90.00

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
REFMAC	refinement
PHASER	phasing

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History & Funding Information

Deposition Data

Deposited Date: 2018-05-20
Released Date: 2018-08-15
Deposition Author(s): Bond, C.S., Haywood, J.

Funding Organization	Location	Grant Number
Australian Research Council	Australia	DP160100107

Revision History

Version 1.0: 2018-08-15
Type: Initial release

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.