6DGG

Cronobacter turicensis RpfR quorum-sensing receptor PAS domain in complex with C12:0


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.498 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.147 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis of DSF recognition by its receptor RpfR and its regulatory interaction with the DSF synthase RpfF.

Waldron, E.J.Snyder, D.Fernandez, N.L.Sileo, E.Inoyama, D.Freundlich, J.S.Waters, C.M.Cooper, V.S.Neiditch, M.B.

(2019) PLoS Biol. 17: e3000123-e3000123


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RpfR
A
110Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032)Mutation(s): 0 
Gene Names: gmr
Find proteins for C9XTL5 (Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032))
Go to UniProtKB:  C9XTL5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DAO
Query on DAO

Download SDF File 
Download CCD File 
A
LAURIC ACID
C12 H24 O2
POULHZVOKOAJMA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.498 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.147 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 39.682α = 90.00
b = 29.131β = 115.29
c = 41.493γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
HKL-2000data reduction
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI125452
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM110444
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI125185

Revision History 

  • Version 1.0: 2019-01-02
    Type: Initial release
  • Version 1.1: 2019-01-09
    Type: Data collection, Experimental preparation
  • Version 1.2: 2019-03-27
    Type: Author supporting evidence, Data collection, Database references