6DEW

Structure of human COQ9 protein with bound isoprene.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.169 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis.

Lohman, D.C.Aydin, D.Von Bank, H.C.Smith, R.W.Linke, V.Weisenhorn, E.McDevitt, M.T.Hutchins, P.Wilkerson, E.M.Wancewicz, B.Russell, J.Stefely, M.S.Beebe, E.T.Jochem, A.Coon, J.J.Bingman, C.A.Dal Peraro, M.Pagliarini, D.J.

(2019) Mol. Cell 73: 763


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquinone biosynthesis protein COQ9, mitochondrial
A, B, C, D, E, F
212Homo sapiensMutation(s): 0 
Gene Names: COQ9 (C16orf49)
Find proteins for O75208 (Homo sapiens)
Go to Gene View: COQ9
Go to UniProtKB:  O75208
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FOH
Query on FOH

Download SDF File 
Download CCD File 
A, D
(2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol
cis,cis-Farnesol
C15 H26 O
CRDAMVZIKSXKFV-FBXUGWQNSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, D, E, F
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
64Z
Query on 64Z

Download SDF File 
Download CCD File 
A, B, D
Geraniol
C10 H18 O
GLZPCOQZEFWAFX-JXMROGBWSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.169 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 116.450α = 90.00
b = 222.780β = 90.00
c = 130.780γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01GM115591
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01GM112057
National Institutes of Health/National Institute of General Medical SciencesUnited StatesT32GM08349

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release
  • Version 2.0: 2019-03-06
    Type: Atomic model, Data collection, Database references, Derived calculations, Structure summary