6DD3

Crystal structure of the double mutant (D52N/D407A) of NT5C2-537X in the active state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure and Mechanisms of NT5C2 Mutations Driving Thiopurine Resistance in Relapsed Lymphoblastic Leukemia.

Dieck, C.L.Tzoneva, G.Forouhar, F.Carpenter, Z.Ambesi-Impiombato, A.Sanchez-Martin, M.Kirschner-Schwabe, R.Lew, S.Seetharaman, J.Tong, L.Ferrando, A.A.

(2018) Cancer Cell 34: 136-147.e6


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cytosolic purine 5'-nucleotidase
A
536Homo sapiensMutation(s): 2 
Gene Names: NT5C2 (NT5B, NT5CP, PNT5)
EC: 3.1.3.5
Find proteins for P49902 (Homo sapiens)
Go to Gene View: NT5C2
Go to UniProtKB:  P49902
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.166 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 90.912α = 90.00
b = 126.500β = 90.00
c = 130.183γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
COMOphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer InstituteUnited StatesCA206501
National Institutes of Health/National Cancer InstituteUnited StatesP30CA013696
National Institutes of Health/National Center for Research ResourcesUnited StatesS10OD012018
National Institutes of Health/National Cancer InstituteUnited StatesT32-CA09503

Revision History 

  • Version 1.0: 2018-07-04
    Type: Initial release
  • Version 1.1: 2018-07-25
    Type: Data collection, Database references