6D7V

Crystal Structure of Rat TRPV6*- in complex with brominated 2-Aminoethoxydiphenyl borate (2-APB-Br)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.3 Å
  • R-Value Free: 0.315 
  • R-Value Work: 0.304 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural bases of TRP channel TRPV6 allosteric modulation by 2-APB.

Singh, A.K.Saotome, K.McGoldrick, L.L.Sobolevsky, A.I.

(2018) Nat Commun 9: 2465-2465


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transient receptor potential cation channel subfamily V member 6
A
672Rattus norvegicusMutation(s): 0 
Gene Names: Trpv6
Find proteins for Q9R186 (Rattus norvegicus)
Go to UniProtKB:  Q9R186
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FYY
Query on FYY

Download SDF File 
Download CCD File 
A
2-aminoethyl (4-bromophenyl)phenylborinate
C14 H15 B Br N O
WVCHSOYKLDCILQ-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.3 Å
  • R-Value Free: 0.315 
  • R-Value Work: 0.304 
  • Space Group: P 4 21 2
Unit Cell:
Length (Å)Angle (°)
a = 144.350α = 90.00
b = 144.350β = 90.00
c = 113.370γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
PHASERphasing
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited States1R01CA206573-01A1

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release