6D7Q

Crystal Structure of Rat TRPV6*-Y466A in complex with 2-Aminoethoxydiphenyl borate (2-APB)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.497 Å
  • R-Value Free: 0.306 
  • R-Value Work: 0.275 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural bases of TRP channel TRPV6 allosteric modulation by 2-APB.

Singh, A.K.Saotome, K.McGoldrick, L.L.Sobolevsky, A.I.

(2018) Nat Commun 9: 2465-2465


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transient receptor potential cation channel subfamily V member 6
A
672Rattus norvegicusMutation(s): 1 
Gene Names: Trpv6
Find proteins for Q9R186 (Rattus norvegicus)
Go to UniProtKB:  Q9R186
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
DTB
Query on DTB

Download SDF File 
Download CCD File 
A
6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID
D-DESTHIOBIOTIN
C10 H18 N2 O3
AUTOLBMXDDTRRT-JGVFFNPUSA-N
 Ligand Interaction
FZ4
Query on FZ4

Download SDF File 
Download CCD File 
A
2-aminoethyl diphenylborinate
C14 H16 B N O
BLZVCIGGICSWIG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.497 Å
  • R-Value Free: 0.306 
  • R-Value Work: 0.275 
  • Space Group: P 4 21 2
Unit Cell:
Length (Å)Angle (°)
a = 145.187α = 90.00
b = 145.187β = 90.00
c = 115.897γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited States1R01CA206573-01A1

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release