6D6Y

AprA Methyltransferase 2 - GNAT didomain in complex with SAH

  • Classification: TRANSFERASE
  • Organism(s): Moorea bouillonii PNG
  • Expression System: Escherichia coli BL21(DE3)

  • Deposited: 2018-04-23 Released: 2018-05-09 
  • Deposition Author(s): Sikkema, A.P., Smith, J.L.
  • Funding Organization(s): National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease; National Institutes of Health/National Cancer Institute; National Institutes of Health/National Institute of General Medical Sciences 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.246 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Biosynthesis of t-Butyl in Apratoxin A: Functional Analysis and Architecture of a PKS Loading Module.

Skiba, M.A.Sikkema, A.P.Moss, N.A.Lowell, A.N.Su, M.Sturgis, R.M.Gerwick, L.Gerwick, W.H.Sherman, D.H.Smith, J.L.

(2018) ACS Chem. Biol. 13: 1640-1650


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
AprA Methyltransferase 2
A
523Moorea bouillonii PNGMutation(s): 0 
Find proteins for A0A1U7N2Z8 (Moorea bouillonii PNG)
Go to UniProtKB:  A0A1U7N2Z8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download SDF File 
Download CCD File 
A
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
TMO
Query on TMO

Download SDF File 
Download CCD File 
A
trimethylamine oxide
C3 H9 N O
UYPYRKYUKCHHIB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.246 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.174 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 151.395α = 90.00
b = 54.206β = 131.81
c = 109.300γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney DiseaseUnited StatesDK042303
National Institutes of Health/National Cancer InstituteUnited StatesCA108874
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM008270

Revision History 

  • Version 1.0: 2018-05-09
    Type: Initial release
  • Version 1.1: 2018-06-27
    Type: Data collection, Database references