6D3E

PPARg LBD in Complex with SR1988


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.395 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural and Dynamic Elucidation of a Non-acid PPARgammaPartial Agonist: SR1988.

Frkic, R.L.Chua, B.S.Shin, Y.Pascal, B.D.Novick, S.J.Kamenecka, T.M.Griffin, P.R.Bruning, J.B.

(2018) Nucl Receptor Res 5: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxisome proliferator-activated receptor gamma
A, B
280Homo sapiensMutation(s): 0 
Gene Names: PPARG (NR1C3)
Find proteins for P37231 (Homo sapiens)
Go to Gene View: PPARG
Go to UniProtKB:  P37231
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FT7
Query on FT7

Download SDF File 
Download CCD File 
A
1-[(2,4-difluorophenyl)methyl]-2,3-dimethyl-N-[(1R)-1-phenylpropyl]-1H-indole-5-carboxamide
C27 H26 F2 N2 O
BLRMZPQNLCVHEV-RUZDIDTESA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.395 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.206 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 93.040α = 90.00
b = 62.510β = 102.32
c = 118.650γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
MOSFLMdata reduction
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-27
    Type: Initial release
  • Version 1.1: 2019-04-10
    Type: Data collection, Database references