6D12

Crystal structure of C-terminal xRRM domain of human Larp7 bound to 7SK stem-loop 4 RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.205 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.228 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for recognition of human 7SK long noncoding RNA by the La-related protein Larp7.

Eichhorn, C.D.Yang, Y.Repeta, L.Feigon, J.

(2018) Proc. Natl. Acad. Sci. U.S.A. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
La-related protein 7
A, B
113Homo sapiensMutation(s): 4 
Gene Names: LARP7
Find proteins for Q4G0J3 (Homo sapiens)
Go to Gene View: LARP7
Go to UniProtKB:  Q4G0J3
Entity ID: 2
MoleculeChainsLengthOrganism
human 7SK RNA stem-loop 4C38Homo sapiens
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.205 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.228 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 47.910α = 90.00
b = 34.030β = 95.18
c = 95.010γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL2Mapphasing
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesGM107567

Revision History 

  • Version 1.0: 2018-06-27
    Type: Initial release
  • Version 1.1: 2018-07-11
    Type: Data collection, Database references