6CQS

Sediminispirochaeta smaragdinae SPS-1 metallo-beta-lactamase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A Noncanonical Metal Center Drives the Activity of the Sediminispirochaeta smaragdinae Metallo-beta-lactamase SPS-1.

Cheng, Z.VanPelt, J.Bergstrom, A.Bethel, C.Katko, A.Miller, C.Mason, K.Cumming, E.Zhang, H.Kimble, R.L.Fullington, S.Bretz, S.L.Nix, J.C.Bonomo, R.A.Tierney, D.L.Page, R.C.Crowder, M.W.

(2018) Biochemistry 57: 5218-5229


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A
246Sediminispirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228)Mutation(s): 0 
EC: 3.5.2.6
Find proteins for E1R245 (Sediminispirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228))
Go to UniProtKB:  E1R245
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.176 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 73.601α = 90.00
b = 73.601β = 90.00
c = 108.784γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM111926

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release
  • Version 1.1: 2018-09-05
    Type: Data collection, Database references
  • Version 1.2: 2018-09-12
    Type: Data collection, Database references