6CN0

2.95 Angstrom Crystal Structure of 16S rRNA Methylase from Proteus mirabilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.220 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

2.95 Angstrom Crystal Structure of 16S rRNA Methylase from Proteus mirabilis.

Minasov, G.Wawrzak, Z.Di Leo, R.Evdokimova, E.Savchenko, A.Satchell, K.J.F.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
16S rRNA (guanine(1405)-N(7))-methyltransferase
A, B, C, D
284Proteus mirabilisMutation(s): 0 
Gene Names: rmtC
EC: 2.1.1.179
UniProt
Find proteins for Q33DX5 (Proteus mirabilis)
Explore Q33DX5 
Go to UniProtKB:  Q33DX5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ33DX5
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CIT
Query on CIT

Download Ideal Coordinates CCD File 
G [auth B]CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
E [auth A]
H [auth B]
I [auth C]
J [auth C]
K [auth D]
E [auth A],
H [auth B],
I [auth C],
J [auth C],
K [auth D],
L [auth D]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
CL
Query on CL

Download Ideal Coordinates CCD File 
F [auth B]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.220 
  • Space Group: P 61
  • Diffraction Data: https://doi.org/10.18430/m36cn0
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 158.318α = 90
b = 158.318β = 90
c = 122.892γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-21
    Type: Initial release
  • Version 1.1: 2023-10-04
    Changes: Data collection, Database references, Refinement description