6CG6

mouse cadherin-10 EC1-2 adhesive fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.707 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.238 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior.

Brasch, J.Katsamba, P.S.Harrison, O.J.Ahlsen, G.Troyanovsky, R.B.Indra, I.Kaczynska, A.Kaeser, B.Troyanovsky, S.Honig, B.Shapiro, L.

(2018) Cell Rep 23: 1840-1852


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cadherin-10
A
207Mus musculusMutation(s): 0 
Gene Names: Cdh10
Find proteins for P70408 (Mus musculus)
Go to UniProtKB:  P70408
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
TAM
Query on TAM

Download SDF File 
Download CCD File 
A
TRIS(HYDROXYETHYL)AMINOMETHANE
C7 H17 N O3
GKODZWOPPOTFGA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.707 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.238 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 87.524α = 90.00
b = 87.524β = 90.00
c = 67.758γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PHASERphasing
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01 GM062270
National Science Foundation (United States)United StatesMCB- 0918535

Revision History 

  • Version 1.0: 2018-05-09
    Type: Initial release
  • Version 1.1: 2018-05-23
    Type: Data collection, Database references