6CFI

Crystal structure of Rad4-Rad23 bound to a 6-4 photoproduct UV lesion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.36 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of Rad4-Rad23 bound to a 6-4 photoproduct UV lesion

Min, J.Jeffrey, P.D.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA repair protein RAD4A538Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RAD4YER162C
Find proteins for P14736 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P14736 
Go to UniProtKB:  P14736
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
UV excision repair protein RAD23X171Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RAD23YEL037CSYGP-ORF29
Find proteins for P32628 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32628 
Go to UniProtKB:  P32628
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsLengthOrganismImage
DNA('-D(*TP*TP*GP*AP*CP*TP*CP*AP*AP*CP*AP*TP*CP*CP*AP*AP*AP*GP*CP*TP*AP*CP*AP*A)-')W24synthetic construct
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(by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsLengthOrganismImage
DNA (5'-D(*AP*TP*TP*GP*TP*AP*GP*CP*(T64)P*TP*GP*GP*AP*TP*GP*TP*TP*GP*AP*GP*TP*CP*A)-3')Y23synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.36 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.221 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.201α = 90
b = 80.201β = 90
c = 405.025γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-02-15 
  • Released Date: 2019-02-27 
  • Deposition Author(s): Min, J., Jeffrey, P.D.

Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United StatesMCB-1412692

Revision History 

  • Version 1.0: 2019-02-27
    Type: Initial release
  • Version 1.1: 2019-11-27
    Changes: Author supporting evidence