☰ Navigation Tabs
Crystal structure of Rad4-Rad23 bound to a 6-4 photoproduct UV lesion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 277 bis-tris propane 5 mM
sodium chloride 100 mM
1-propanol 14%
spermidine-HCl 5 mM
dithiothreitol 5 mM
Crystal Properties Matthews coefficient Solvent content 4.13 70.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.201 α = 90 b = 80.201 β = 90 c = 405.025 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD MAR CCD 130 mm 2010-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 18-ID 0.97938 APS 18-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.362 68.95 95.89 0.232 0.2411 0.06416 0.998 11.98 13.8 19112 100.86313439
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.362 3.483 72.75 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.36241919841 74.5664038231 1.99257533985 19109 964 95.904642409 0.221283344424 0.218896046274 0.216 0.26822142011 0.2695 113.091042262
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.1110773231 f_angle_d 0.910446748498 f_chiral_restr 0.0469385679943 f_plane_restr 0.00747620322038 f_bond_d 0.00527404803942
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4495 Nucleic Acid Atoms 978 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHENIX phasing