6CF2

Crystal structure of HIV-1 Rev (residues 1-93)-RNA aptamer complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.208 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of an RNA Aptamer that Can Inhibit HIV-1 by Blocking Rev-Cognate RNA (RRE) Binding and Rev-Rev Association.

Dearborn, A.D.Eren, E.Watts, N.R.Palmer, I.W.Kaufman, J.D.Steven, A.C.Wingfield, P.T.

(2018) Structure --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Anti-Rev Antibody, heavy chain
A
123N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Anti-Rev Antibody, light chain
B
110N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Protein Rev
F
93Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: rev
Find proteins for Q76PP8 (Human immunodeficiency virus 1)
Go to UniProtKB:  Q76PP8
Entity ID: 4
MoleculeChainsLengthOrganism
RNA (35-MER)G35synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.208 
  • Space Group: I 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 64.190α = 90.00
b = 97.680β = 109.70
c = 87.836γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
NIHUnited StatesIntramural Research Program

Revision History 

  • Version 1.0: 2018-07-25
    Type: Initial release