6CF2 | pdb_00006cf2

Crystal structure of HIV-1 Rev (residues 1-93)-RNA aptamer complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	V-set	e6cf2B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
C [auth F]	REV	e6cf2F1	A: alpha bundles	X: HIV Rev (From Topology)	H: HIV Rev (From Topology)	T: HIV Rev	F: REV	ECOD (1.6)
A	V-set_8	e6cf2A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth F]	6.10.140.630	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B	Anti-Rev Antibody	V-KAPPA	Oryctolagus cuniculus (rabbit)	IGKV1S302, IGKJ1-204	V-DOMAIN V-KAPPA	IG	FV-HEAVY_KAPPA	IMGT (202546-0)
A	Anti-Rev Antibody	VH	Oryctolagus cuniculus (rabbit)	IGHV1S6901, IGHJ602	V-DOMAIN VH	IG	FV-HEAVY_KAPPA	IMGT (202546-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B	Light Chain	IGKV1	Kappa	protein rev \| rna (35-mer)	SAbDab (2025-11-28)
A	Heavy Chain	IGHV1	-	protein rev \| rna (35-mer)	SAbDab (2025-11-28)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Anti-Rev Antibody, light chain	-	-	-
C [auth F]	Protein Rev	transcription regulator activity DNA-binding transcription factor activity RNA binding binding nucleic acid binding	RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport cellular localization establishment of protein localization nucleocytoplasmic transport RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport cellular localization establishment of protein localization nucleocytoplasmic transport nuclear transport intracellular transport protein export from nucleus protein transport establishment of localization in cell cellular process intracellular protein localization nuclear export intracellular protein transport viral process	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region host cell cytoplasm
D [auth G]	RNA (35-MER)	-	-	-
A	Anti-Rev Antibody, heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth F]	IPR000625	Anti-repression trans-activator protein, REV protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.