6CBV

Crystal structure of BRIL bound to an affinity matured synthetic antibody.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.872 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal strutcure of BRIL bound to an affinity matured synthetic antibody.

Mukherjee, S.Erramilli, S.K.Coukos, J.Skrobek, B.Radziwon, K.Dutka, P.Sung, Y.M.Kang, Y.Gao, X.Xu, E.Kossiakoff, A.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Heavy chain, Fab fragment
H
229N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Light Chain, Fab fragment
L
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
BRIL
B
106Escherichia coliMutation(s): 3 
Gene Names: cybC
Find proteins for P0ABE7 (Escherichia coli)
Go to UniProtKB:  P0ABE7
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
L
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
FMT
Query on FMT

Download SDF File 
Download CCD File 
H, L
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
H, L
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.872 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.194 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 87.954α = 90.00
b = 87.954β = 90.00
c = 159.107γ = 120.00
Software Package:
Software NamePurpose
XDSdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01GM117372-01
National Institutes of Health/National Institute of General Medical SciencesUnited StatesU54GM087519-01

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Structure summary
  • Version 1.2: 2019-02-20
    Type: Author supporting evidence, Data collection, Structure summary