6C9B

The structure of MppP soaked with the products 4HKA and 2KA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.689 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.151 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Streptomyces wadayamensis MppP is a PLP-Dependent Oxidase, Not an Oxygenase.

Han, L.Vuksanovic, N.Oehm, S.A.Fenske, T.G.Schwabacher, A.W.Silvaggi, N.R.

(2018) Biochemistry 57: 3252-3264


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PLP-Dependent L-Arginine Hydroxylase MppP
A, B, C, D
376Streptomyces wadayamensisMutation(s): 0 
Find proteins for A0A0X1KHF5 (Streptomyces wadayamensis)
Go to UniProtKB:  A0A0X1KHF5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
EGV
Query on EGV

Download SDF File 
Download CCD File 
B
(4S)-5-carbamimidamido-4-hydroxy-2-oxopentanoic acid
C6 H11 N3 O4
RPBOKETVUMOUHD-VKHMYHEASA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
LLP
Query on LLP
A, B, C, D
L-PEPTIDE LINKINGC14 H22 N3 O7 PLYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.689 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.151 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 86.110α = 90.00
b = 108.830β = 90.00
c = 195.170γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
PHENIXrefinement
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (United States)United StatesCHE-1606842

Revision History 

  • Version 1.0: 2018-04-04
    Type: Initial release
  • Version 1.1: 2018-06-20
    Type: Data collection, Database references