Immunogenetic and structural analysis of a class of HCV broadly neutralizing antibodies and their precursors.

Aleman, F.; Tzarum, N.; Kong, L.; Nagy, K.; Zhu, J.; Wilson, I.A.; Law, M.

doi:10.2210/pdb6bzw/pdb

Macromolecule Content

Total Structure Weight: 197574.95
Atom Count: 13579
Residue Count: 1820
Unique protein chains: 3

6BZW

Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the GL precursor of the broadly neutralizing antibody AP33

DOI: 10.2210/pdb6BZW/pdb

Classification: IMMUNE SYSTEM
Organism(s): Hepatitis C virus genotype 1a (isolate H)
Expression System: Homo sapiens

Deposited: 2017-12-26 Released: 2018-06-20
Deposition Author(s): Tzarum, N., Alemn, F., Wilson, I.A., Law, M.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.2 Å
R-Value Free: 0.231
R-Value Work: 0.192

wwPDB Validation3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Immunogenetic and structural analysis of a class of HCV broadly neutralizing antibodies and their precursors.

Aleman, F., Tzarum, N., Kong, L., Nagy, K., Zhu, J., Wilson, I.A., Law, M.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 7569-7574

PubMed: 29954862 Search on PubMed
Primary Citation of Related Structures:
6BZY, 6BZV, 6BZU

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
AP33 GL Heavy Chain	C, A, E, G	223	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
AP33 GL Light Chain	D, B, F, H	219	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
E2 AS412 peptide	I, J, K, L	13	Hepatitis C virus genotype 1a (isolate H)	Mutation(s): 0
Find proteins for P27958 (Hepatitis C virus genotype 1a (isolate H)) Go to UniProtKB: P27958
Protein Feature View Full Protein Feature View for P27958

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.2 Å
R-Value Free: 0.231
R-Value Work: 0.192
Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 60.356	α = 90.00
b = 84.709	β = 89.96
c = 192.919	γ = 90.00

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHENIX	refinement
SCALEPACK	data scaling
PHASER	phasing
HKL-2000	data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History & Funding Information

Deposition Data

Deposited Date: 2017-12-26
Released Date: 2018-06-20
Deposition Author(s): Tzarum, N., Alemn, F., Wilson, I.A., Law, M.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases	United States	AI106005
National Institutes of Health/National Institute Of Allergy and Infectious Diseases	United States	AI123365

Revision History

Version 1.0: 2018-06-20
Type: Initial release
Version 1.1: 2018-07-11
Type: Data collection, Database references
Version 1.2: 2018-07-25
Type: Data collection, Database references
Version 1.3: 2019-02-20
Type: Author supporting evidence, Data collection

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Deposition Help & Resources

151079 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

6BZW

Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the GL precursor of the broadly neutralizing antibody AP33

Immunogenetic and structural analysis of a class of HCV broadly neutralizing antibodies and their precursors.

Entity ID: 1

Entity ID: 2

Entity ID: 3

Experimental Data

Structure Validation

Deposition Data

Revision History