Macromolecule Content

Total Structure Weight: 38575.29
Atom Count: 2432
Residue Count: 356
Unique protein chains: 1

6BXE

Crystal structure of Variable Lymphocyte Receptor 9 (VLR9)

DOI: 10.2210/pdb6BXE/pdb

Classification: IMMUNE SYSTEM
Organism(s): Petromyzon marinus
Expression System: Spodoptera frugiperda

Deposited: 2017-12-18 Released: 2018-05-09
Deposition Author(s): Gunn, R.J., Wilson, I.A., Cooper, M.D., Herrin, B.R.
Funding Organization(s): National Institutes of Health

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.651 Å
R-Value Free: 0.173
R-Value Work: 0.153

wwPDB Validation3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

VLR Recognition of TLR5 Expands the Molecular Characterization of Protein Antigen Binding by Non-Ig-based Antibodies.

Gunn, R.J., Herrin, B.R., Acharya, S., Cooper, M.D., Wilson, I.A.

(2018) J. Mol. Biol. 430: 1350-1367

PubMed: 29596914 Search on PubMed
Primary Citation of Related Structures:
6BXD, 6BXC, 6BXA

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Variable lymphocyte receptor diversity region	A, B	178	Petromyzon marinus	Mutation(s): 0
Find proteins for A5HBR7 (Petromyzon marinus) Go to UniProtKB: A5HBR7
Protein Feature View Full Protein Feature View for A5HBR7

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.651 Å
R-Value Free: 0.173
R-Value Work: 0.153
Space Group: P 6₁

Unit Cell:

Length (Å)	Angle (°)
a = 75.511	α = 90.00
b = 75.511	β = 90.00
c = 99.307	γ = 120.00

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PHASER	phasing
HKL-2000	data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History & Funding Information

Deposition Data

Deposited Date: 2017-12-18
Released Date: 2018-05-09
Deposition Author(s): Gunn, R.J., Wilson, I.A., Cooper, M.D., Herrin, B.R.

Funding Organization	Location	Grant Number
National Institutes of Health	United States	A1042266
National Institutes of Health	United States	AI072435

Revision History

Version 1.0: 2018-05-09
Type: Initial release

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.