6BRQ

Crystal structure of rice ASK1-D3 ubiquitin ligase complex crystal form 3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.220 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.

Shabek, N.Ticchiarelli, F.Mao, H.Hinds, T.R.Leyser, O.Zheng, N.

(2018) Nature 563: 652-656


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
F-box/LRR-repeat MAX2 homolog
B, D
688Oryza sativa subsp. japonicaMutation(s): 0 
Gene Names: D3
Find proteins for Q5VMP0 (Oryza sativa subsp. japonica)
Go to UniProtKB:  Q5VMP0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
SKP1-like protein 1A
A, C
160Arabidopsis thalianaMutation(s): 0 
Gene Names: SKP1A (ASK1, SKP1, UIP1)
Find proteins for Q39255 (Arabidopsis thaliana)
Go to UniProtKB:  Q39255
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.220 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 77.908α = 90.00
b = 113.306β = 99.00
c = 92.858γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
REFMACrefinement
MOLREPphasing
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-11-21
    Type: Initial release
  • Version 1.1: 2018-12-05
    Type: Data collection, Database references
  • Version 1.2: 2018-12-12
    Type: Data collection, Database references