6BRQ

Crystal structure of rice ASK1-D3 ubiquitin ligase complex crystal form 3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth A]	d6brqa1	All alpha proteins	Skp1 dimerisation domain-like	Skp1 dimerisation domain-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
D [auth C]	d6brqc1	All alpha proteins	Skp1 dimerisation domain-like	Skp1 dimerisation domain-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	F_UNCLASSIFIED	e6brqB1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth B]	PF12937	e6brqB2	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: PF12937	ECOD (1.6)
C [auth D]	F_UNCLASSIFIED	e6brqD2	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth D]	PF12937	e6brqD1	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: PF12937	ECOD (1.6)
B [auth A]	PF01466,PF03931	e6brqA1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: PF01466,PF03931	ECOD (1.6)
D [auth C]	PF01466,PF03931	e6brqC1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: PF01466,PF03931	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (utative)
D [auth C]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], C [auth D]	PF12937	F-box-like (F-box-like)	F-box-like	This is an F-box-like family.	Domain
B [auth A], D [auth C]	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], C [auth D]	F-box/LRR-repeat MAX2 homolog	-	developmental process multicellular organismal process regulation of biological process regulation of multicellular organismal development regulation of developmental process negative regulation of developmental process negative regulation of biological process biological regulation regulation of seedling development seed germination negative regulation of post-embryonic development seedling development multicellular organism development regulation of post-embryonic development negative regulation of seed germination developmental process multicellular organismal process regulation of biological process regulation of multicellular organismal development regulation of developmental process negative regulation of developmental process negative regulation of biological process biological regulation regulation of seedling development seed germination negative regulation of post-embryonic development seedling development multicellular organism development regulation of post-embryonic development negative regulation of seed germination regulation of seed germination anatomical structure development regulation of multicellular organismal process post-embryonic development negative regulation of multicellular organismal process response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation response to inorganic substance regulation of meristem structural organization tissue development anatomical structure morphogenesis meristem development anatomical structure arrangement meristem structural organization shoot system development shoot system morphogenesis system development cuticle development response to light stimulus response to radiation regulation of shoot system morphogenesis regulation of anatomical structure morphogenesis developmental growth morphogenesis of a branching structure growth bud dilation developmental growth involved in morphogenesis organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process organic substance metabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process positive regulation of biological process positive regulation of response to water deprivation positive regulation of response to stimulus regulation of response to stimulus regulation of response to water deprivation regulation of response to stress localization auxin polar transport transport regulation of hormone levels auxin transport hormone transport regulation of biological quality establishment of localization	cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity
B [auth A], D [auth C]	SKP1-like protein 1A	-	organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process cellular response to stimulus response to organic substance regulation of cellular process response to stimulus signaling hormone-mediated signaling pathway intracellular signal transduction cell communication cellular response to endogenous stimulus ethylene-activated signaling pathway response to hormone response to ethylene signal transduction cellular response to organic substance cellular response to hormone stimulus regulation of biological process phosphorelay signal transduction system cellular response to ethylene stimulus response to endogenous stimulus biological regulation cellular response to chemical stimulus response to chemical cellular process response to auxin cell cycle chromosome segregation cell cycle process cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization response to lipid response to jasmonic acid response to fatty acid response to oxygen-containing compound cellular response to jasmonic acid stimulus jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to lipid regulation of DNA recombination negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process DNA recombination regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process negative regulation of DNA recombination organic cyclic compound metabolic process negative regulation of DNA metabolic process regulation of metabolic process regulation of DNA metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal auxin-activated signaling pathway cellular response to auxin stimulus	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle phragmoplast cytosol cytoskeleton spindle intracellular non-membrane-bounded organelle microtubule cytoskeleton membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle phragmoplast cytosol cytoskeleton spindle intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], C [auth D]	IPR036047	F-box-like domain superfamily	Homologous Superfamily
A [auth B], C [auth D]	IPR001810	F-box domain	Domain
A [auth B], C [auth D]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A [auth B], C [auth D]	IPR006553	Leucine-rich repeat, cysteine-containing subtype	Repeat
B [auth A], D [auth C]	IPR016073	SKP1 component, POZ domain	Domain
B [auth A], D [auth C]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
B [auth A], D [auth C]	IPR001232	S-phase kinase-associated protein 1-like	Family
B [auth A], D [auth C]	IPR016072	SKP1 component, dimerisation	Domain
B [auth A], D [auth C]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
B [auth A], D [auth C]	IPR016897	S-phase kinase-associated protein 1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.