6BRQ | pdb_00006brq

Crystal structure of rice ASK1-D3 ubiquitin ligase complex crystal form 3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth C]	d6brqc1	All alpha proteins	Skp1 dimerisation domain-like	Skp1 dimerisation domain-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
B [auth A]	d6brqa1	All alpha proteins	Skp1 dimerisation domain-like	Skp1 dimerisation domain-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth D]	GspL_C	e6brqD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: GspL_C	ECOD (v294.1)
A [auth B]	GspL_C	e6brqB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: GspL_C	ECOD (v294.1)
D [auth C]	GspL_C	e6brqC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: GspL_C	ECOD (v294.1)
B [auth A]	GspL_C	e6brqA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: GspL_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth C]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (utative)
B [auth A]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], C [auth D]	PF12937	F-box-like (F-box-like)	F-box-like	This is an F-box-like family.	Domain
B [auth A], D [auth C]	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], C [auth D]	F-box/LRR-repeat MAX2 homolog	-	developmental process multicellular organismal process regulation of biological process regulation of developmental process biological regulation shoot system morphogenesis multicellular organism development anatomical structure morphogenesis regulation of shoot system morphogenesis anatomical structure development shoot system development regulation of anatomical structure morphogenesis system development developmental growth developmental process multicellular organismal process regulation of biological process regulation of developmental process biological regulation shoot system morphogenesis multicellular organism development anatomical structure morphogenesis regulation of shoot system morphogenesis anatomical structure development shoot system development regulation of anatomical structure morphogenesis system development developmental growth morphogenesis of a branching structure growth bud dilation developmental growth involved in morphogenesis catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
B [auth A], D [auth C]	SKP1-like protein 1A	protein binding binding cullin family protein binding	cellular process cell cycle mitotic cell cycle chromosome segregation cell cycle process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound cellular response to stimulus cellular process cell cycle mitotic cell cycle chromosome segregation cell cycle process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound cellular response to stimulus regulation of cellular process signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus signal transduction cellular response to hormone stimulus regulation of biological process biological regulation jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus cellular response to lipid sexual reproduction reproductive process organelle fission meiotic cell cycle male meiotic nuclear division multicellular organismal reproductive process meiotic cell cycle process male gamete generation gamete generation cellular component organization nuclear division organelle organization meiotic nuclear division cellular component organization or biogenesis regulation of DNA recombination negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process DNA recombination primary metabolic process regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process negative regulation of DNA recombination negative regulation of DNA metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process phosphorelay signal transduction system cellular response to ethylene stimulus intracellular signal transduction ethylene-activated signaling pathway response to ethylene response to auxin microtubule cytoskeleton organization microtubule-based process cytoskeleton organization auxin-activated signaling pathway cellular response to auxin stimulus	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle phragmoplast cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle phragmoplast cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], C [auth D]	IPR036047	F-box-like domain superfamily	Homologous Superfamily
A [auth B], C [auth D]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A [auth B], C [auth D]	IPR001810	F-box domain	Domain
A [auth B], C [auth D]	IPR006553	Leucine-rich repeat, cysteine-containing subtype	Repeat
B [auth A], D [auth C]	IPR016073	SKP1 component, POZ domain	Domain
B [auth A], D [auth C]	IPR001232	S-phase kinase-associated protein 1-like	Family
B [auth A], D [auth C]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
B [auth A], D [auth C]	IPR016072	SKP1 component, dimerisation	Domain
B [auth A], D [auth C]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
B [auth A], D [auth C]	IPR016897	S-phase kinase-associated protein 1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.