6BBX

Crystal structure of TnmS3 in complex with TNM C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Resistance to Enediyne Antitumor Antibiotics by Sequestration.

Chang, C.Y.Yan, X.Crnovcic, I.Annaval, T.Chang, C.Nocek, B.Rudolf, J.D.Yang, D.Babnigg, G.Joachimiak, A.Phillips Jr., G.N.Shen, B.

(2018) Cell Chem Biol 25: 1075-1085.e4


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glyoxalase/bleomycin resisance protein/dioxygenase
A, B
144Streptomyces sp. CB03234Mutation(s): 0 
Gene Names: tnmS3
Find proteins for A0A125SA29 (Streptomyces sp. CB03234)
Go to UniProtKB:  A0A125SA29
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
D77
Query on D77

Download SDF File 
Download CCD File 
A
methyl (2R,3R)-2,3-dihydroxy-3-[(1aS,11S,11aR,14Z,18R)-3,7,8,18-tetrahydroxy-4,9-dioxo-4,9,10,11-tetrahydro-11aH-11,1a-hept[3]ene[1,5]diynonaphtho[2,3-h]oxireno[c]quinolin-11a-yl]butanoate
C29 H21 N O11
KPDKPRCLDGTNFK-UUNAQHPASA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.216 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 45.310α = 90.00
b = 67.760β = 90.00
c = 83.910γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
MOLREPphasing
REFMACrefinement
SCALAdata scaling
MAR345dtbdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2018-07-04
    Type: Initial release
  • Version 1.1: 2018-07-11
    Type: Data collection, Database references
  • Version 1.2: 2018-10-03
    Type: Data collection, Database references