5UMX

Crystal structure of TnmS3 in complex with riboflavin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Resistance to Enediyne Antitumor Antibiotics by Sequestration.

Chang, C.Y.Yan, X.Crnovcic, I.Annaval, T.Chang, C.Nocek, B.Rudolf, J.D.Yang, D.Babnigg, G.Joachimiak, A.Phillips Jr., G.N.Shen, B.

(2018) Cell Chem Biol 25: 1075-1085.e4


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glyoxalase/bleomycin resisance protein/dioxygenase
A, B
140Streptomyces sp. CB03234Mutation(s): 0 
Gene Names: tnmS3
Find proteins for A0A125SA29 (Streptomyces sp. CB03234)
Go to UniProtKB:  A0A125SA29
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RBF
Query on RBF

Download SDF File 
Download CCD File 
B
RIBOFLAVIN
RIBOFLAVINE; VITAMIN B2
C17 H20 N4 O6
AUNGANRZJHBGPY-SCRDCRAPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.165 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 45.059α = 90.00
b = 60.915β = 90.00
c = 85.659γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-3000data scaling
HKL-3000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2018-07-04
    Type: Initial release
  • Version 1.1: 2018-07-11
    Type: Data collection, Database references
  • Version 1.2: 2018-10-03
    Type: Data collection, Database references