6BB4 | pdb_00006bb4

Fab/epitope complex of mouse monoclonal antibody C5.2 targeting a phospho-tau epitope.

  • Classification: IMMUNE SYSTEM
  • Organism(s): Mus musculus, Homo sapiens
  • Mutation(s): No 

  • Deposited: 2017-10-16 Released: 2018-05-02 
  • Deposition Author(s): Chukwu, J.E., Kong, X.-P.
  • Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS), National Institutes of Health/National Institute on Aging (NIH/NIA)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 
    0.270 (Depositor), 0.245 (DCC) 
  • R-Value Work: 
    0.218 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 6BB4

Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history

Literature

Tau Antibody Structure Reveals a Molecular Switch Defining a Pathological Conformation of the Tau Protein.

Chukwu, J.E.Pedersen, J.T.Pedersen, L.O.Volbracht, C.Sigurdsson, E.M.Kong, X.P.

(2018) Sci Rep 8: 6209-6209

  • DOI: https://doi.org/10.1038/s41598-018-24276-4
  • Primary Citation Related Structures: 
    6BB4

  • PubMed Abstract: 

    Tau antibodies have shown therapeutic potential for Alzheimer's disease and several are in clinical trials. As a microtubule-associated protein, tau relies on dynamic phosphorylation for its normal functions. In tauopathies, it becomes hyperphosphorylated and aggregates into toxic assemblies, which collectively lead to neurodegeneration. Of the phospho-epitopes, the region around Ser396 has received particular attention because of its prominence and stability in tauopathies. Here we report the first structure of a monoclonal tau antibody in complex with the pathologically important phospho-Ser396 residue. Its binding region reveals tau residues Tyr394 to phospho-Ser396 stabilized in a β-strand conformation that is coordinated by a phospho-specific antigen binding site. These details highlight a molecular switch that defines this prominent conformation of tau and ways to target it. Overall, the structure of the antibody-antigen complex clarifies why certain phosphorylation sites in tau are more closely linked to neurodegeneration than others.


  • Organizational Affiliation
    • Departments of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.

Macromolecule Content 

  • Total Structure Weight: 150.08 kDa 
  • Atom Count: 10,894 
  • Modeled Residue Count: 1,302 
  • Deposited Residue Count: 1,368 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Mouse monoclonal antibody C5.2 Fab light chainA [auth L],
D [auth M],
G [auth N]
213Mus musculusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Mouse monoclonal antibody C5.2 Fab heavy chainB [auth H],
E [auth I],
H [auth J]
220Mus musculusMutation(s): 0 
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Microtubule-associated protein tauC [auth P],
F [auth Q],
I [auth R]
23Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P10636 (Homo sapiens)
Explore P10636 
Go to UniProtKB:  P10636
PHAROS:  P10636
GTEx:  ENSG00000186868 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10636
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free:  0.270 (Depositor), 0.245 (DCC) 
  • R-Value Work:  0.218 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 161.156α = 90
b = 40.535β = 104.07
c = 228.064γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing
Cootmodel building

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesNS077239
National Institutes of Health/National Institute on Aging (NIH/NIA)United StatesAG032611

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-02
    Type: Initial release
  • Version 1.1: 2019-12-18
    Changes: Author supporting evidence
  • Version 1.2: 2024-10-30
    Changes: Data collection, Database references, Structure summary