6B6T

Orthorhombic trypsin cryocooled to 100 K with 50% methanol as cryoprotectant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.119 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Orthorhombic trypsin cryocooled to 100 K with 50% methanol as cryoprotectant

Juers, D.H.Farley, C.A.Saxby, C.Cotter, R.Cahn, J.Holton-Burke, C.Wu, B.Harrison, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cationic trypsin
A
223Bos taurusMutation(s): 0 
EC: 3.4.21.4
Find proteins for P00760 (Bos taurus)
Go to UniProtKB:  P00760
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

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Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MOH
Query on MOH

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Download CCD File 
A
METHANOL
C H4 O
OKKJLVBELUTLKV-UHFFFAOYSA-N
 Ligand Interaction
BEN
Query on BEN

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Download CCD File 
A
BENZAMIDINE
C7 H8 N2
PXXJHWLDUBFPOL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.119 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 54.384α = 90.00
b = 58.095β = 90.00
c = 65.846γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
Cootmodel building
CrysalisProdata reduction
phenix.refinerefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-10-03 
  • Released Date: 2018-03-14 
  • Deposition Author(s): Juers, D.H.

Funding OrganizationLocationGrant Number
NIHUnited States2R15GM090248

Revision History 

  • Version 1.0: 2018-03-14
    Type: Initial release