Macromolecule Content

Total Structure Weight: 23816.93
Atom Count: 1710
Residue Count: 223
Unique protein chains: 1

6B6N

Orthorhombic trypsin (295 K) in the presence of 50% mpd

DOI: 10.2210/pdb6B6N/pdb

Classification: HYDROLASE
Organism(s): Bos taurus
Expression System: Bos taurus

Deposited: 2017-10-03 Released: 2017-11-01
Deposition Author(s): Juers, D.H.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å
R-Value Free: 0.157
R-Value Work: 0.121

wwPDB Validation3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.

Juers, D.H., Farley, C.A., Saxby, C.P., Cotter, R.A., Cahn, J.K.B., Holton-Burke, R.C., Harrison, K., Wu, Z.

(2018) Acta Crystallogr D Struct Biol 74: 922-938

PubMed: 30198901 Search on PubMed
Primary Citation of Related Structures:
6B6T, 6DZF, 6D6H, 6D6G, 6D6F, 6D6E, 6D5U, 6D5T, 6D5S, 6D5R, 6D5Q, 6D5P, 6D5O, 6D5N, 6B6S, 6B6R, 6B6Q, 6B6P, 6B6O, 6AVL, 5UUE, 5UUD, 5UUC, 5UUB, 5UUA, 5UU9, 5UU8, 5UU7, 5UN3

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Cationic trypsin	A	223	Bos taurus	Mutation(s): 0 EC: 3.4.21.4
Find proteins for P00760 (Bos taurus) Go to UniProtKB: P00760
Protein Feature View Full Protein Feature View for P00760

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
SO4 Query on SO4 Download SDF File Download CCD File	A	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
CA Query on CA Download SDF File Download CCD File	A	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction
MRD Query on MRD Download SDF File Download CCD File	A	(4R)-2-METHYLPENTANE-2,4-DIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-RXMQYKEDSA-N		Ligand Interaction
BEN Query on BEN Download SDF File Download CCD File	A	BENZAMIDINE C₇ H₈ N₂ PXXJHWLDUBFPOL-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2 Å
R-Value Free: 0.157
R-Value Work: 0.121
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 54.692	α = 90.00
b = 58.538	β = 90.00
c = 67.576	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	refinement
CrysalisPro	data reduction
SCALA	data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History & Funding Information

Deposition Data

Deposited Date: 2017-10-03
Released Date: 2017-11-01
Deposition Author(s): Juers, D.H.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences	United States	2R15GM090248

Revision History

Version 1.0: 2017-11-01
Type: Initial release
Version 1.1: 2017-12-06
Type: Author supporting evidence
Version 1.2: 2018-09-19
Type: Data collection, Database references

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.