6AX7

The crystal structure of a lysyl hydroxylase from Acanthamoeba polyphaga mimivirus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.002 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Pro-metastatic collagen lysyl hydroxylase dimer assemblies stabilized by Fe2+-binding.

Guo, H.F.Tsai, C.L.Terajima, M.Tan, X.Banerjee, P.Miller, M.D.Liu, X.Yu, J.Byemerwa, J.Alvarado, S.Kaoud, T.S.Dalby, K.N.Bota-Rabassedas, N.Chen, Y.Yamauchi, M.Tainer, J.A.Phillips, G.N.Kurie, J.M.

(2018) Nat Commun 9: 512-512


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Procollagen lysyl hydroxylase and glycosyltransferase
A, B
235Acanthamoeba polyphaga mimivirusMutation(s): 0 
EC: 1.14.11.4, 2.4.1.-
Find proteins for Q5UQC3 (Acanthamoeba polyphaga mimivirus)
Go to UniProtKB:  Q5UQC3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FE2
Query on FE2

Download SDF File 
Download CCD File 
A, B
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.002 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.183 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 109.460α = 90.00
b = 109.460β = 90.00
c = 84.023γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
XDSdata reduction
PHENIXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer InstituteUnited StatesR01CA105155
National Institutes of Health/National Cancer InstituteUnited StatesP50CA70907
Cancer Prevention and Research Institute of TexasUnited StatesRP160652

Revision History 

  • Version 1.0: 2018-02-21
    Type: Initial release
  • Version 1.1: 2018-02-28
    Type: Author supporting evidence