6AJM

Crystal structure of apo AtaTR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.604 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.

Yashiro, Y.Yamashita, S.Tomita, K.

(2019) Structure 27: 476


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N-acetyltransferase
A, B
183Escherichia coliMutation(s): 0 
Find proteins for A0A1V3CQ74 (Escherichia coli)
Go to UniProtKB:  A0A1V3CQ74
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
DUF1778 domain-containing protein
C, D, E, F
88Escherichia coliMutation(s): 0 
Gene Names: ybl13 (ybl13_1)
Find proteins for J7QA90 (Escherichia coli)
Go to UniProtKB:  J7QA90
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PGE
Query on PGE

Download SDF File 
Download CCD File 
B
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.604 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.213 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 101.090α = 90.00
b = 116.420β = 90.00
c = 77.490γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapan18H03980
Japan Science and TechnologyJapan26113002

Revision History 

  • Version 1.0: 2019-01-02
    Type: Initial release
  • Version 1.1: 2019-01-23
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2019-02-13
    Type: Data collection, Database references
  • Version 1.3: 2019-03-20
    Type: Data collection, Database references