6A4I

Crystal Structure of human TDO inhibitor complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.208 

wwPDB Validation 3D Report Full Report



Literature

Crystal Structure of human TDO inhibitor complex

Fu, G.Wang, J.Luo, G.Wu, G.Qian, K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Tryptophan 2,3-dioxygenaseABCD391Homo sapiensMutation(s): 0 
Gene Names: TDO2TDO
EC: 1.13.11.11
Find proteins for P48775 (Homo sapiens)
Explore P48775 
Go to UniProtKB:  P48775
NIH Common Fund Data Resources
PHAROS  P48775
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

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A, B, C, D
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
9R9
Query on 9R9

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A, B, C, D
1-(6-chloro-1H-indazol-4-yl)cyclohexan-1-ol
C13 H15 Cl N2 O
BMCNEGXEBQNZAQ-UHFFFAOYSA-N
 Ligand Interaction
TRP
Query on TRP

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A, B, D
TRYPTOPHAN
C11 H12 N2 O2
QIVBCDIJIAJPQS-VIFPVBQESA-N
 Ligand Interaction
CIT
Query on CIT

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A
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.208 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 156.308α = 90
b = 144.106β = 90
c = 89.002γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release