5IT7

Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Structural characterization of ribosome recruitment and translocation by type IV IRES.

Murray, J.Savva, C.G.Shin, B.S.Dever, T.E.Ramakrishnan, V.Fernandez, I.S.

(2016) Elife 5

  • DOI: 10.7554/eLife.13567
  • Primary Citation of Related Structures:  
    5IT9, 5IT7

  • PubMed Abstract: 
  • Viral mRNA sequences with a type IV IRES are able to initiate translation without any host initiation factors. Initial recruitment of the small ribosomal subunit as well as two translocation steps before the first peptidyl transfer are essential for the initiation of translation by these mRNAs ...

    Viral mRNA sequences with a type IV IRES are able to initiate translation without any host initiation factors. Initial recruitment of the small ribosomal subunit as well as two translocation steps before the first peptidyl transfer are essential for the initiation of translation by these mRNAs. Using electron cryomicroscopy (cryo-EM) we have structurally characterized at high resolution how the Cricket Paralysis Virus Internal Ribosomal Entry Site (CrPV-IRES) binds the small ribosomal subunit (40S) and the translocation intermediate stabilized by elongation factor 2 (eEF2). The CrPV-IRES restricts tvhe otherwise flexible 40S head to a conformation compatible with binding the large ribosomal subunit (60S). Once the 60S is recruited, the binary CrPV-IRES/80S complex oscillates between canonical and rotated states (Fernández et al., 2014; Koh et al., 2014), as seen for pre-translocation complexes with tRNAs. Elongation factor eEF2 with a GTP analog stabilizes the ribosome-IRES complex in a rotated state with an extra ~3 degrees of rotation. Key residues in domain IV of eEF2 interact with pseudoknot I (PKI) of the CrPV-IRES stabilizing it in a conformation reminiscent of a hybrid tRNA state. The structure explains how diphthamide, a eukaryotic and archaeal specific post-translational modification of a histidine residue of eEF2, is involved in translocation.


    Organizational Affiliation

    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.



Macromolecules

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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
KLLA0D16027pD [auth AA]249Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CQM3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 5
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60S ribosomal protein L3E [auth BB]384Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CJR7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
KLLA0B07139pF [auth CC]360Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CW41 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 7
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KLLA0D06941pG [auth DD]295Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CRR9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
KLLA0B04686pH [auth EE]170Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CWE7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 9
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KLLA0D03410pI [auth FF]222Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CS71 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 10
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KLLA0E00573pJ [auth GG]233Kluyveromyces lactisMutation(s): 0 
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Find proteins for B4UN96 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 11
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KLLA0F04499pK [auth HH]191Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CLA6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 12
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KLLA0D05643pL [auth II]216Kluyveromyces lactisMutation(s): 0 
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Entity ID: 13
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KLLA0F08261pM [auth JJ]168Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CKT4 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 14
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60S ribosomal protein L13N [auth LL]197Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q875M0 (Kluyveromyces lactis)
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Entity ID: 15
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KLLA0B13409pO [auth MM]136Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CVB1 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 16
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Ribosomal protein L15P [auth NN]202Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CJL7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 17
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KLLA0F04675pQ [auth OO]198Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CL98 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 18
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KLLA0A06336pR [auth PP]180Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CXQ6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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KLLA0A07227pS [auth QQ]184Kluyveromyces lactisMutation(s): 0 
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Entity ID: 20
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KLLA0E12453pT [auth RR]188Kluyveromyces lactisMutation(s): 0 
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Entity ID: 21
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60S ribosomal protein L20U [auth SS]169Kluyveromyces lactisMutation(s): 0 
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Entity ID: 22
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KLLA0E23651pV [auth TT]158Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CM20 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 23
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KLLA0D05181pW [auth UU]100Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CRZ8 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 24
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KLLA0E06997pX [auth VV]132Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CP75 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 25
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60S ribosomal protein L24Y [auth WW]62Kluyveromyces lactisMutation(s): 0 
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Find proteins for P38665 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 26
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60S ribosomal protein L25Z [auth XX]121Kluyveromyces lactisMutation(s): 0 
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Find proteins for P48045 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 27
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KLLA0B05742pAA [auth YY]125Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CW97 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 28
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KLLA0E03455pBA [auth ZZ]134Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CPN9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 29
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RPL28CA [auth aa]147Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q8J287 (Kluyveromyces lactis)
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Entity ID: 30
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KLLA0D16071pDA [auth bb]57Kluyveromyces lactisMutation(s): 0 
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Entity ID: 31
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60S ribosomal protein L30EA [auth cc]97Kluyveromyces lactisMutation(s): 0 
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Find proteins for P38664 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 32
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KLLA0B02937pFA [auth dd]106Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CWM6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 33
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KLLA0E06843pGA [auth ee]122Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CP82 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 34
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KLLA0D07405pHA [auth ff]105Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CRP7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 35
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KLLA0C08371pIA [auth gg]121Kluyveromyces lactisMutation(s): 0 
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Entity ID: 36
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KLLA0F05247pJA [auth hh]116Kluyveromyces lactisMutation(s): 0 
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60S ribosomal protein L36KA [auth ii]98Kluyveromyces lactisMutation(s): 0 
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Entity ID: 38
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Ribosomal protein L37LA [auth jj]85Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CUW0 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 39
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KLLA0C18216pMA [auth kk]76Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CSS8 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 40
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60S ribosomal protein L39NA [auth ll]49Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPL39RPL46SPB2YJL189WJ0360
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Entity ID: 41
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Ubiquitin fusion proteinOA [auth mm]51Kluyveromyces lactisMutation(s): 0 
Gene Names: ubi1
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Find proteins for Q9Y854 (Kluyveromyces lactis)
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Entity ID: 42
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60S ribosomal protein L41-APA [auth nn]25Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPL41ARPL47AYL41AYDL184CD1290
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Find proteins for P0CX86 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 43
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60S ribosomal protein L44QA [auth oo]101Kluyveromyces lactisMutation(s): 0 
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Find proteins for P31027 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 44
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KLLA0E05941pRA [auth pp]87Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CPC5 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 45
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Ribosomal proteinSA [auth qq]217Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CWR9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 46
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60S acidic ribosomal protein P0TA [auth rr]195Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CW89 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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uL11UA [auth KK]147Kluyveromyces lactisMutation(s): 0 
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Entity ID: 48
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40S ribosomal protein S0VA [auth A]206Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CN12 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 49
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40S ribosomal protein S1WA [auth B]214Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CWD0 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 50
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KLLA0F09812pXA [auth C]217Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CKL3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 51
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KLLA0D08305pYA [auth D]223Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CRK7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 52
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40S ribosomal protein S4ZA [auth E]260Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CWJ2 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 53
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KLLA0D10659pAB [auth F]206Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CRA3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 54
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40S ribosomal protein S6BB [auth G]226Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CM04 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 55
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KLLA0C13519pCB [auth H]184Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CTD6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 56
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40S ribosomal protein S8DB [auth I]200Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CMG3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 57
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KLLA0E23673pEB [auth J]182Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CM18 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 58
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KLLA0B08173pFB [auth K]96Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CVZ5 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 59
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KLLA0A10483pGB [auth L]155Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q6CX80 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 60
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40S ribosomal protein S12HB [auth M]122Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CLU4 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 61
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KLLA0F18040pIB [auth N]150Kluyveromyces lactisMutation(s): 0 
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Entity ID: 62
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40S ribosomal protein S14JB [auth O]127Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for P27069 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 63
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KLLA0F07843pKB [auth P]123Kluyveromyces lactisMutation(s): 0 
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Entity ID: 64
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40S ribosomal protein S16LB [auth Q]141Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q875N2 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 65
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KLLA0B01474pMB [auth R]129Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CWU3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 66
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KLLA0B01562pNB [auth S]145Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CWT9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 67
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KLLA0A07194pOB [auth T]143Kluyveromyces lactisMutation(s): 0 
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Entity ID: 68
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KLLA0F25542pPB [auth U]106Kluyveromyces lactisMutation(s): 0 
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Entity ID: 69
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40S ribosomal protein S21QB [auth V]87Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CXT6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 70
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40S ribosomal protein S22RB [auth W]129Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CW21 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 71
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RPS23SB [auth X]145Kluyveromyces lactisMutation(s): 0 
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Entity ID: 72
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40S ribosomal protein S24TB [auth Y]134Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CU44 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 73
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KLLA0B06182pUB [auth Z]70Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CW78 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 74
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KLLA0D05115pVB [auth a]100Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CS01 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 75
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40S ribosomal protein S27WB [auth b]82Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CNL2 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 76
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40S ribosomal protein S28XB [auth c]63Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for P33285 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 77
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40S ribosomal protein S29YB [auth d]53Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CPG3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 78
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KLLA0C04809pZB [auth e]55Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 79
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Ubiquitin-40S ribosomal protein S27aAC [auth f]69Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for P69061 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 80
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KLLA0E12277pBC [auth g]324Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CNI7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 83
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Eft2pEC [auth 1]827Saccharomyces cerevisiae P283Mutation(s): 0 
Gene Names: Eft2P283_D20866
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Entity ID: 1
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25S ribosomal RNAA [auth 5]3270Kluyveromyces lactis
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5S ribosomal RNAB [auth 7]121Kluyveromyces lactis
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Entity ID: 3
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5.8S ribosomal RNAC [auth 8]157Kluyveromyces lactis
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Entity ID: 81
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18S ribosomal RNACC [auth 2]1798Kluyveromyces lactis
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cricket paralysis virus IRESDC [auth 4]190Cricket paralysis virus
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Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GCP (Subject of Investigation/LOI)
Query on GCP

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NF [auth 1]PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
C11 H18 N5 O13 P3
PHBDHXOBFUBCJD-KQYNXXCUSA-N
 Ligand Interaction
6EM
Query on 6EM

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OF [auth 1](2S)-1-amino-N,N,N-trimethyl-1-oxobutan-2-aminium
C7 H17 N2 O
LPOFDMFKBRMZLU-LURJTMIESA-O
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
HC [auth jj], IC [auth mm], JC [auth oo], LC [auth a], MC [auth b], NC [auth f]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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AD [auth 2] , AE [auth 2] , AF [auth 2] , BD [auth 2] , BE [auth 2] , BF [auth 2] , CD [auth 2] , CE [auth 2] , 
AD [auth 2],  AE [auth 2],  AF [auth 2],  BD [auth 2],  BE [auth 2],  BF [auth 2],  CD [auth 2],  CE [auth 2],  CF [auth 2],  DD [auth 2],  DE [auth 2],  DF [auth 2],  ED [auth 2],  EE [auth 2],  EF [auth 2],  FC [auth 5],  FD [auth 2],  FE [auth 2],  FF [auth 2],  GC [auth 5],  GD [auth 2],  GE [auth 2],  GF [auth 2],  HD [auth 2],  HE [auth 2],  HF [auth 2],  ID [auth 2],  IE [auth 2],  IF [auth 2],  JD [auth 2],  JE [auth 2],  JF [auth 2],  KC [auth N],  KD [auth 2],  KE [auth 2],  KF [auth 2],  LD [auth 2],  LE [auth 2],  LF [auth 2],  MD [auth 2],  ME [auth 2],  MF [auth 1],  ND [auth 2],  NE [auth 2],  OC [auth f],  OD [auth 2],  OE [auth 2],  PC [auth 2],  PD [auth 2],  PE [auth 2],  QC [auth 2],  QD [auth 2],  QE [auth 2],  RC [auth 2],  RD [auth 2],  RE [auth 2],  SC [auth 2],  SD [auth 2],  SE [auth 2],  TC [auth 2],  TD [auth 2],  TE [auth 2],  UC [auth 2],  UD [auth 2],  UE [auth 2],  VC [auth 2],  VD [auth 2],  VE [auth 2],  WC [auth 2],  WD [auth 2],  WE [auth 2],  XC [auth 2],  XD [auth 2],  XE [auth 2],  YC [auth 2],  YD [auth 2],  YE [auth 2],  ZC [auth 2],  ZD [auth 2],  ZE [auth 2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_U105184332
Wellcome TrustUnited KingdomWT096570
National Institutes of HealthUnited StatesIntramural Research Program

Revision History  (Full details and data files)

  • Version 1.0: 2016-05-18
    Type: Initial release
  • Version 1.1: 2017-08-02
    Changes: Data collection, Derived calculations
  • Version 1.2: 2018-03-28
    Changes: Advisory
  • Version 1.3: 2018-10-24
    Changes: Advisory, Data collection, Derived calculations
  • Version 1.4: 2018-11-21
    Changes: Advisory, Data collection, Derived calculations