5EG0

HOXB13-MEIS1 heterodimer bound to DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.285 
  • R-Value Observed: 0.288 

wwPDB Validation 3D Report Full Report



Literature

Molecular basis of recognition of two distinct DNA sequences by a single transcription factor

Morgunova, E.Yin, Y.Jolma, A.Popov, A.Taipale, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Homeobox protein Meis2A57Homo sapiensMutation(s): 0 
Gene Names: MEIS2MRG1
Find proteins for O14770 (Homo sapiens)
Explore O14770 
Go to UniProtKB:  O14770
NIH Common Fund Data Resources
PHAROS  O14770
Protein Feature View
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  • Reference Sequence

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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Homeobox protein Hox-B13B61Homo sapiensMutation(s): 0 
Gene Names: HOXB13
Find proteins for Q92826 (Homo sapiens)
Explore Q92826 
Go to UniProtKB:  Q92826
NIH Common Fund Data Resources
PHAROS  Q92826
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*G)-3')D18synthetic construct
  • Find similar nucleic acids by: Sequence   |   Structure
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*CP*TP*CP*GP*TP*AP*AP*AP*AP*CP*TP*GP*TP*CP*AP*AP*C)-3')E18synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.285 
  • R-Value Observed: 0.288 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.726α = 90
b = 56.332β = 90
c = 115.152γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-11-09
    Type: Initial release