Download MendeleyCRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L11 FROM METHANOCOCCUS JANNASCHII
Gabdulkhakov, A.G.To be published.
5COL
RIBOSOMAL PROTEIN L11 FROM METHANOCOCCUS JANNASCHII
- PDB DOI: 10.2210/pdb5COL/pdb
- Classification: TRANSLATION
- Organism(s): Methanocaldococcus jannaschii
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-07-20 Released: 2016-08-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.252
- R-Value Work: 0.215
- R-Value Observed: 0.217
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 50S ribosomal protein L11 | A, B | 161 | Methanocaldococcus jannaschii | Mutation(s): 0 Gene Names: rpl11, MJ0373 |  |
UniProt | |||||
Find proteins for P54030 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore P54030 Go to UniProtKB: P54030 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P54030 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | F [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | Ligand Interaction | |
| PGE Query on PGE | D [auth B] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | Ligand Interaction | |
| PEG Query on PEG | E [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.252
- R-Value Work: 0.215
- R-Value Observed: 0.217
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.15 | α = 90 |
| b = 88.05 | β = 90 |
| c = 142.92 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2016-08-17 Deposition Author(s): Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.
Revision History (Full details and data files)
- Version 1.0: 2016-08-17
Type: Initial release
