X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5295100 mM Sodium Citrate, pH 5.0, 0.1 M MgCl2, 27% PEG 600
Crystal Properties
Matthews coefficientSolvent content
3.1360.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.15α = 90
b = 88.05β = 90
c = 142.92γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2015-02-13MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.97625, 0.97917ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25097.80.05513.574.2522254

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.2544.0319710103898.160.217030.215130.25237RANDOM66.403
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.45-5.166.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg45.035
r_dihedral_angle_4_deg24.558
r_dihedral_angle_3_deg20.95
r_long_range_B_refined11.436
r_long_range_B_other11.434
r_scangle_other8.844
r_dihedral_angle_1_deg7.264
r_mcangle_it6.829
r_mcangle_other6.828
r_scbond_other5.837
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg45.035
r_dihedral_angle_4_deg24.558
r_dihedral_angle_3_deg20.95
r_long_range_B_refined11.436
r_long_range_B_other11.434
r_scangle_other8.844
r_dihedral_angle_1_deg7.264
r_mcangle_it6.829
r_mcangle_other6.828
r_scbond_other5.837
r_scbond_it5.836
r_mcbond_it4.67
r_mcbond_other4.661
r_angle_refined_deg1.741
r_angle_other_deg0.832
r_chiral_restr0.089
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2320
Nucleic Acid Atoms
Solvent Atoms28
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHENIXphasing