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RIBOSOMAL PROTEIN L11 FROM METHANOCOCCUS JANNASCHII
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 100 mM Sodium Citrate, pH 5.0, 0.1 M MgCl2, 27% PEG 600
Crystal Properties Matthews coefficient Solvent content 3.13 60.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.15 α = 90 b = 88.05 β = 90 c = 142.92 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-02-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97625, 0.97917 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 97.8 0.055 13.57 4.25 22254
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 44.03 19710 1038 98.16 0.21703 0.21513 0.25237 0.2555 RANDOM 66.403
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.45 -5.16 6.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.035 r_dihedral_angle_4_deg 24.558 r_dihedral_angle_3_deg 20.95 r_long_range_B_refined 11.436 r_long_range_B_other 11.434 r_scangle_other 8.844 r_dihedral_angle_1_deg 7.264 r_mcangle_it 6.829 r_mcangle_other 6.828 r_scbond_other 5.837
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.035 r_dihedral_angle_4_deg 24.558 r_dihedral_angle_3_deg 20.95 r_long_range_B_refined 11.436 r_long_range_B_other 11.434 r_scangle_other 8.844 r_dihedral_angle_1_deg 7.264 r_mcangle_it 6.829 r_mcangle_other 6.828 r_scbond_other 5.837 r_scbond_it 5.836 r_mcbond_it 4.67 r_mcbond_other 4.661 r_angle_refined_deg 1.741 r_angle_other_deg 0.832 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2320 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHENIX phasing