5A5T

Structure of mammalian eIF3 in the context of the 43S preinitiation complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.4 of the entry. See complete history


Literature

Structure of Mammalian Eif3 in the Context of the 43S Preinitiation Complex.

Des-Georges, A.Dhote, V.Kuhn, L.Hellen, C.U.T.Pestova, T.V.Frank, J.Hashem, Y.

(2015) Nature 525: 491

  • DOI: 10.1038/nature14891
  • Primary Citation of Related Structures:  
    5A5T, 5A5U

  • PubMed Abstract: 
  • During eukaryotic translation initiation, 43S complexes, comprising a 40S ribosomal subunit, initiator transfer RNA and initiation factors (eIF) 2, 3, 1 and 1A, attach to the 5'-terminal region of messenger RNA and scan along it to the initiation codon. Scanning on structured mRNAs also requires the DExH-box protein DHX29 ...

    During eukaryotic translation initiation, 43S complexes, comprising a 40S ribosomal subunit, initiator transfer RNA and initiation factors (eIF) 2, 3, 1 and 1A, attach to the 5'-terminal region of messenger RNA and scan along it to the initiation codon. Scanning on structured mRNAs also requires the DExH-box protein DHX29. Mammalian eIF3 contains 13 subunits and participates in nearly all steps of translation initiation. Eight subunits having PCI (proteasome, COP9 signalosome, eIF3) or MPN (Mpr1, Pad1, amino-terminal) domains constitute the structural core of eIF3, to which five peripheral subunits are flexibly linked. Here we present a cryo-electron microscopy structure of eIF3 in the context of the DHX29-bound 43S complex, showing the PCI/MPN core at ∼6 Å resolution. It reveals the organization of the individual subunits and their interactions with components of the 43S complex. We were able to build near-complete polyalanine-level models of the eIF3 PCI/MPN core and of two peripheral subunits. The implications for understanding mRNA ribosomal attachment and scanning are discussed.


    Organizational Affiliation

    CNRS, Architecture et Réactivité de l'ARN, Université de Strasbourg, Strasbourg 67084, France.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT AA1,362Oryctolagus cuniculusMutation(s): 0 
Gene Names: EIF3AEIF3S10
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UniProt GroupG1SMZ5
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT CB [auth C]843Oryctolagus cuniculusMutation(s): 0 
Gene Names: EIF3CEIF3S8
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Entity ID: 3
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EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EC [auth E]445Oryctolagus cuniculusMutation(s): 0 
Gene Names: EIF3EEIF3S6INT6
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UniProt GroupG1SUC8
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT FD [auth F]364Oryctolagus cuniculusMutation(s): 0 
EC: 3.4.19.12
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT HE [auth H]352Oryctolagus cuniculusMutation(s): 0 
Gene Names: EIF3HEIF3S3
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Entity ID: 6
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EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT KF [auth K]218Oryctolagus cuniculusMutation(s): 0 
Gene Names: EIF3KEIF3S12
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
UNCHARACTERIZED PROTEING [auth L]564Oryctolagus cuniculusMutation(s): 0 
Gene Names: EIF3LEIF3EIPEIF3S6IP
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT MH [auth M]374Oryctolagus cuniculusMutation(s): 0 
Gene Names: EIF3M
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-09
    Type: Initial release
  • Version 1.1: 2015-09-23
    Changes: Database references
  • Version 1.2: 2015-09-30
    Changes: Database references
  • Version 1.3: 2017-08-30
    Changes: Data collection
  • Version 1.4: 2018-10-03
    Changes: Data collection