5A5T

Structure of mammalian eIF3 in the context of the 43S preinitiation complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2 FamilyEukaryotic translation initiation factor 3 subunit C (EIF3C) N-terminal domain-like8047255 4005530 SCOP2 (2022-06-29)
B [auth C]SCOP2 FamilyPCI domain (PINT motif)8093048 4000147 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyTPR-like8093045 3001345 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyWinged helix DNA-binding domain8093052 3000034 SCOP2 (2022-06-29)
E [auth H]SCOP2 FamilyEIF3 subunit F C-terminal domain-like8053285 4005957 SCOP2 (2022-06-29)
E [auth H]SCOP2 FamilyJAB1/Mov34/MPN/PAD-1/JAMM domain-like8048977 4006292 SCOP2 (2022-06-29)
E [auth H]SCOP2 SuperfamilyEIF3 subunit F C-terminal domain-like8053287 3002167 SCOP2 (2022-06-29)
E [auth H]SCOP2 SuperfamilyJAB1/MPN domain-like8053286 3001105 SCOP2 (2022-06-29)
C [auth E]SCOP2 FamilyEIF3E-like8044847 4004173 SCOP2 (2022-06-29)
C [auth E]SCOP2 FamilyPCI domain (PINT motif)8091487 4000147 SCOP2 (2022-06-29)
C [auth E]SCOP2 SuperfamilyTPR-like8091484 3001345 SCOP2 (2022-06-29)
C [auth E]SCOP2 SuperfamilyWinged helix DNA-binding domain8091488 3000034 SCOP2 (2022-06-29)
D [auth F]SCOP2 FamilyEIF3 subunit F C-terminal domain-like8048105 4005957 SCOP2 (2022-06-29)
D [auth F]SCOP2 FamilyJAB1/Mov34/MPN/PAD-1/JAMM domain-like8048973 4006292 SCOP2 (2022-06-29)
D [auth F]SCOP2 SuperfamilyEIF3 subunit F C-terminal domain-like8053239 3002167 SCOP2 (2022-06-29)
D [auth F]SCOP2 SuperfamilyJAB1/MPN domain-like8053240 3001105 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth C]PCIe5a5tC2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
B [auth C]eIF-3c_Ne5a5tC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: eIF-3c_NECOD (1.6)
E [auth H]JAB_1e5a5tH1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
E [auth H]KOG1560e5a5tH2 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: KOG1560ECOD (1.6)
APCIe5a5tA2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
AKOG2072e5a5tA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2072ECOD (1.6)
C [auth E]PCIe5a5tE2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
C [auth E]eIF3_Ne5a5tE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: eIF3_NECOD (1.6)
C [auth E]KOG2758e5a5tE3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG2758ECOD (1.6)
D [auth F]JAB_1e5a5tF1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
D [auth F]MitMem_rege5a5tF2 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
F [auth K]CSN8_PSD8_EIF3K_Ce5a5tK2 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_CECOD (1.6)
F [auth K]SAC3_GANP_1ste5a5tK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)
G [auth L]Paf67_2nde5a5tL2 A: alpha arraysX: HTHH: HTHT: wingedF: Paf67_2ndECOD (1.6)
G [auth L]Paf67_1ste5a5tL1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Paf67_1stECOD (1.6)
H [auth M]PCIe5a5tM2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
H [auth M]KOG2753_1ste5a5tM1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2753_1stECOD (1.6)
H [auth M]KOG2753_2nde5a5tM3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN9 C-terminal helixF: KOG2753_2ndECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth C]PF05470Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N)Eukaryotic translation initiation factor 3 subunit 8 N-terminus- Repeat
B [auth C]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
E [auth H]PF19445C-terminal region of eIF3h (eIF3h_C)C-terminal region of eIF3h- Family
E [auth H]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
C [auth E]PF09440eIF3 subunit 6 N terminal domain (eIF3_N)eIF3 subunit 6 N terminal domainThis is the N terminal domain of subunit 6 translation initiation factor eIF3.Domain
C [auth E]PF21357Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)Eukaryotic translation initiation factor 3 subunit E, C-terminalEukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1].Domain
C [auth E]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
F [auth K]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
G [auth L]PF10255RNA polymerase I-associated factor PAF67 (Paf67)RNA polymerase I-associated factor PAF67- Repeat
H [auth M]PF18005eIF3 subunit M, C-terminal helix (eIF3m_C_helix)eIF3 subunit M, C-terminal helixThis is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1].Domain
H [auth M]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth C]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C
E [auth H]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A
C [auth E]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E
D [auth F]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F---
F [auth K]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K
G [auth L]UNCHARACTERIZED PROTEIN
H [auth M]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT M

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth C]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
B [auth C]IPR000717Proteasome component (PCI) domainDomain
B [auth C]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
B [auth C]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
B [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
E [auth H]IPR037518MPN domainDomain
E [auth H]IPR027524Eukaryotic translation initiation factor 3 subunit HFamily
E [auth H]IPR045810eIF3h, C-terminalDomain
E [auth H]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
IPR027512Eukaryotic translation initiation factor 3 subunit AFamily
IPR000717Proteasome component (PCI) domainDomain
C [auth E]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
C [auth E]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
C [auth E]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
C [auth E]IPR000717Proteasome component (PCI) domainDomain
F [auth K]IPR016024Armadillo-type foldHomologous Superfamily
F [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
F [auth K]IPR033464CSN8/PSMD8/EIF3KDomain
F [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
F [auth K]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
F [auth K]IPR000717Proteasome component (PCI) domainDomain
F [auth K]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily
G [auth L]IPR000717Proteasome component (PCI) domainDomain
G [auth L]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
G [auth L]IPR019382Translation initiation factor 3 complex subunit LFamily
H [auth M]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
H [auth M]IPR000717Proteasome component (PCI) domainDomain
H [auth M]IPR016024Armadillo-type foldHomologous Superfamily
H [auth M]IPR040750eIF3 subunit M, C-terminal helix domainDomain
H [auth M]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth M]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily