5A5T
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2 Family | Eukaryotic translation initiation factor 3 subunit C (EIF3C) N-terminal domain-like | 8047255 | 4005530 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2 Family | PCI domain (PINT motif) | 8093048 | 4000147 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2 Superfamily | TPR-like | 8093045 | 3001345 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8093052 | 3000034 | SCOP2 (2022-06-29) |
E [auth H] | SCOP2 Family | EIF3 subunit F C-terminal domain-like | 8053285 | 4005957 | SCOP2 (2022-06-29) |
E [auth H] | SCOP2 Family | JAB1/Mov34/MPN/PAD-1/JAMM domain-like | 8048977 | 4006292 | SCOP2 (2022-06-29) |
E [auth H] | SCOP2 Superfamily | EIF3 subunit F C-terminal domain-like | 8053287 | 3002167 | SCOP2 (2022-06-29) |
E [auth H] | SCOP2 Superfamily | JAB1/MPN domain-like | 8053286 | 3001105 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2 Family | EIF3E-like | 8044847 | 4004173 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2 Family | PCI domain (PINT motif) | 8091487 | 4000147 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2 Superfamily | TPR-like | 8091484 | 3001345 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8091488 | 3000034 | SCOP2 (2022-06-29) |
D [auth F] | SCOP2 Family | EIF3 subunit F C-terminal domain-like | 8048105 | 4005957 | SCOP2 (2022-06-29) |
D [auth F] | SCOP2 Family | JAB1/Mov34/MPN/PAD-1/JAMM domain-like | 8048973 | 4006292 | SCOP2 (2022-06-29) |
D [auth F] | SCOP2 Superfamily | EIF3 subunit F C-terminal domain-like | 8053239 | 3002167 | SCOP2 (2022-06-29) |
D [auth F] | SCOP2 Superfamily | JAB1/MPN domain-like | 8053240 | 3001105 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | PCI | e5a5tC2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
B [auth C] | eIF-3c_N | e5a5tC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: eIF-3c_N | ECOD (1.6) |
E [auth H] | JAB_1 | e5a5tH1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: JAB_1 | ECOD (1.6) |
E [auth H] | KOG1560 | e5a5tH2 | A: extended segments | X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain | F: KOG1560 | ECOD (1.6) |
A | PCI | e5a5tA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
A | KOG2072 | e5a5tA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2072 | ECOD (1.6) |
C [auth E] | PCI | e5a5tE2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
C [auth E] | eIF3_N | e5a5tE1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: eIF3_N | ECOD (1.6) |
C [auth E] | KOG2758 | e5a5tE3 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN7 C-terminal helix | F: KOG2758 | ECOD (1.6) |
D [auth F] | JAB_1 | e5a5tF1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: JAB_1 | ECOD (1.6) |
D [auth F] | MitMem_reg | e5a5tF2 | A: extended segments | X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain | F: MitMem_reg | ECOD (1.6) |
F [auth K] | CSN8_PSD8_EIF3K_C | e5a5tK2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: CSN8_PSD8_EIF3K_C | ECOD (1.6) |
F [auth K] | SAC3_GANP_1st | e5a5tK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: SAC3_GANP_1st | ECOD (1.6) |
G [auth L] | Paf67_2nd | e5a5tL2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Paf67_2nd | ECOD (1.6) |
G [auth L] | Paf67_1st | e5a5tL1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Paf67_1st | ECOD (1.6) |
H [auth M] | PCI | e5a5tM2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PCI | ECOD (1.6) |
H [auth M] | KOG2753_1st | e5a5tM1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2753_1st | ECOD (1.6) |
H [auth M] | KOG2753_2nd | e5a5tM3 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN9 C-terminal helix | F: KOG2753_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth C] | PF05470 | Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N) | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | - | Repeat |
B [auth C] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
E [auth H] | PF19445 | C-terminal region of eIF3h (eIF3h_C) | C-terminal region of eIF3h | - | Family |
E [auth H] | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB) | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | - | Family |
PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain | |
C [auth E] | PF09440 | eIF3 subunit 6 N terminal domain (eIF3_N) | eIF3 subunit 6 N terminal domain | This is the N terminal domain of subunit 6 translation initiation factor eIF3. | Domain |
C [auth E] | PF21357 | Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C) | Eukaryotic translation initiation factor 3 subunit E, C-terminal | Eukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1]. | Domain |
C [auth E] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
F [auth K] | PF10075 | CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K) | CSN8/PSMD8/EIF3K family | - | Family |
G [auth L] | PF10255 | RNA polymerase I-associated factor PAF67 (Paf67) | RNA polymerase I-associated factor PAF67 | - | Repeat |
H [auth M] | PF18005 | eIF3 subunit M, C-terminal helix (eIF3m_C_helix) | eIF3 subunit M, C-terminal helix | This is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1]. | Domain |
H [auth M] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |