5ZMC

Structural Basis for Reactivation of -146C>T Mutant TERT Promoter by cooperative binding of p52 and ETS1/2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.259 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for reactivating the mutant TERT promoter by cooperative binding of p52 and ETS1.

Xu, X.Li, Y.Bharath, S.R.Ozturk, M.B.Bowler, M.W.Loo, B.Z.L.Tergaonkar, V.Song, H.

(2018) Nat Commun 9: 3183-3183


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Protein C-ets-1
B
111Homo sapiensMutation(s): 0 
Gene Names: ETS1 (EWSR2)
Find proteins for P14921 (Homo sapiens)
Go to Gene View: ETS1
Go to UniProtKB:  P14921
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Nuclear factor NF-kappa-B p100 subunit
A
295Homo sapiensMutation(s): 0 
Gene Names: NFKB2 (LYT10)
Find proteins for Q00653 (Homo sapiens)
Go to Gene View: NFKB2
Go to UniProtKB:  Q00653
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*GP*GP*GP*GP*AP*CP*CP*CP*GP*GP*AP*AP*GP*GP*G)-3')C16Homo sapiens
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*GP*CP*CP*CP*TP*TP*CP*CP*GP*GP*GP*TP*CP*CP*CP*C)-3')D16Homo sapiens
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.259 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 71.414α = 90.00
b = 71.414β = 90.00
c = 262.520γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release
  • Version 1.1: 2018-10-17
    Type: Data collection, Database references