Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: immunoprecipitation

Macromolecule Content

• Total Structure Weight: 56082.24 
• Atom Count: 2393 
• Residue Count: 438 
• Unique protein chains: 2
• Unique nucleic acid chains: 2

5ZMC

Structural Basis for Reactivation of -146C>T Mutant TERT Promoter by cooperative binding of p52 and ETS1/2

• DOI: 10.2210/pdb5ZMC/pdb
• NDB: 5ZMC

• Classification: TRANSCRIPTION/DNA
• Organism(s): Homo sapiens
• Expression System: Escherichia coli


• Deposited: 2018-04-02 Released: 2018-09-19 
• Deposition Author(s): Xu, X., Bharath, S.R., Song, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.99 Å
• R-Value Free: 0.288 
• R-Value Work: 0.259 

Literature

Structural basis for reactivating the mutant TERT promoter by cooperative binding of p52 and ETS1.

Xu, X., Li, Y., Bharath, S.R., Ozturk, M.B., Bowler, M.W., Loo, B.Z.L., Tergaonkar, V., Song, H.

(2018) Nat Commun 9: 3183-3183

• PubMed: 30093619 

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
Protein C-ets-1	B	111	Homo sapiens	Mutation(s): 0  Gene Names: ETS1 (EWSR2)
Find proteins for P14921 (Homo sapiens) Go to Gene View: ETS1 Go to UniProtKB:  P14921

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
Nuclear factor NF-kappa-B p100 subunit	A	295	Homo sapiens	Mutation(s): 0  Gene Names: NFKB2 (LYT10)
Find proteins for Q00653 (Homo sapiens) Go to Gene View: NFKB2 Go to UniProtKB:  Q00653

Entity ID: 1
Molecule	Chains	Length	Organism
DNA (5'-D(P*CP*GP*GP*GP*GP*AP*CP*CP*CP*GP*GP*AP*AP*GP*GP*G)-3')	C	16	Homo sapiens

Entity ID: 2
Molecule	Chains	Length	Organism
DNA (5'-D(P*GP*CP*CP*CP*TP*TP*CP*CP*GP*GP*GP*TP*CP*CP*CP*C)-3')	D	16	Homo sapiens

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.99 Å
• R-Value Free: 0.288 
• R-Value Work: 0.259 
• Space Group: P 4₁ 2 2

Unit Cell:

Length (Å)	Angle (°)
a = 71.414	α = 90.00
b = 71.414	β = 90.00
c = 262.520	γ = 90.00

Software Package:

Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2018-04-02 
• Released Date: 2018-09-19 
• Deposition Author(s): Xu, X., Bharath, S.R., Song, H.

Revision History 

• Version 1.0: 2018-09-19
  Type: Initial release
• Version 1.1: 2018-10-17
  Type: Data collection, Database references