5Z80

Solution structure for the 1:1 complex of a platinum(II)-based tripod bound to a hybrid-1 human telomeric G-quadruplex


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding

Liu, W.Zhong, Y.F.Liu, L.Y.Shen, C.T.Zeng, W.Wang, F.Yang, D.Mao, Z.W.

(2018) Nat Commun 9: 3496-3496


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
G-quadruplex DNA (26-MER)A26Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9F0
Query on 9F0

Download SDF File 
Download CCD File 
A
4-[1-(2,5,8-triazonia-1$l^4-platinabicyclo[3.3.0]octan-1-yl)pyridin-1-ium-4-yl]-N,N-bis[4-[1-(2,5,8-triazonia-1$l^4-platinabicyclo[3.3.0]octan-1-yl)pyridin-1-ium-4-yl]phenyl]aniline
C45 H63 N13 Pt3
HWOQXVGDGHJZJY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
973 programChina2014CB845604 and 2015CB856301
National Science Foundation of ChinaChina21231007 and 21572282
Ministry of Education of ChinaChinaIRT-17R111
Science and Technology Planning Project of Guangdong ProvinceChina2013B051000047 and 207999

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release