5YS3

1.8 angstrom crystal structure of Succinate-Acetate Permease from Citrobacter koseri

  • Classification: TRANSPORT PROTEIN
  • Organism(s): Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
  • Expression System: Escherichia coli

  • Deposited: 2017-11-13 Released: 2018-04-25 
  • Deposition Author(s): Qiu, B., Liao, J.
  • Funding Organization(s): Ministry of Science and Technology of China; National Science and Technology Major Project; National Key Scientific Instrument and Equipment Development Program; Joint Fund of the National Natural Science Foundation of China and the Israel Science Foundation Research Program; China Post-Doctoral Science Foundation 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.823 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Succinate-acetate permease from Citrobacter koseri is an anion channel that unidirectionally translocates acetate

Qiu, B., Xia, B., Zhou, Q., Lu, Y., He, M., Hasegawa, K., Ma, Z., Zhang, F., Gu, L., Mao, Q., Wang, F., Zhao, S., Gao, Z., Liao, J.

(2018) Cell Res. 28: 644-654


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Succinate-Acetate Permease
A, B, C
192Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)Mutation(s): 0 
Find proteins for A8ALU5 (Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696))
Go to UniProtKB:  A8ALU5
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
78M
Query on 78M
Download SDF File 
Download CCD File 
A, B, C
(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
7.8 MONOACYLGLYCEROL
C18 H34 O4
BJMLBVHMHXYQFS-JJEJIETFSA-N
 Ligand Interaction
ACT
Query on ACT
Download SDF File 
Download CCD File 
A, B, C
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
PLM
Query on PLM
Download SDF File 
Download CCD File 
A, B, C
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.823 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.160 
  • Space Group: P 42
Unit Cell:
Length (Å)Angle (°)
a = 79.456α = 90.00
b = 79.456β = 90.00
c = 89.099γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
SHELXDphasing
XDSdata reduction
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-11-13 
  • Released Date: 2018-04-25 
  • Deposition Author(s): Qiu, B., Liao, J.
Funding OrganizationLocationGrant Number
Ministry of Science and Technology of ChinaChina2017YFA0504800
National Science and Technology Major ProjectChina2017ZX09101005-003-003
National Key Scientific Instrument and Equipment Development ProgramChina2012YQ03026010
Joint Fund of the National Natural Science Foundation of China and the Israel Science Foundation Research ProgramChina8146114802
China Post-Doctoral Science FoundationChina2016M600344

Revision History 

  • Version 1.0: 2018-04-25
    Type: Initial release
  • Version 1.1: 2018-06-20
    Type: Data collection, Database references