5YS3 | pdb_00005ys3

1.8 angstrom crystal structure of Succinate-Acetate Permease from Citrobacter koseri

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Succinate-acetate permease SatP-like	8095819	3002706	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Succinate-acetate permease SatP-like	8095819	3002706	SCOP2B (2022-06-29)
A	SCOP2 Family	Succinate-acetate permease SatP-like	8095818	4007809	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Succinate-acetate permease SatP-like	8095819	3002706	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	UNK_F_TYPE	e5ys3C1	A: alpha complex topology	X: Acid-activated urea channel (From Topology)	H: Acid-activated urea channel (From Topology)	T: Acid-activated urea channel	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e5ys3B1	A: alpha complex topology	X: Acid-activated urea channel (From Topology)	H: Acid-activated urea channel (From Topology)	T: Acid-activated urea channel	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e5ys3A1	A: alpha complex topology	X: Acid-activated urea channel (From Topology)	H: Acid-activated urea channel (From Topology)	T: Acid-activated urea channel	F: UNK_F_TYPE	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Succinate-Acetate Permease	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity solute:monoatomic cation symporter activity acetate:monoatomic cation symporter activity acetate transmembrane transporter activity carboxylic acid transmembrane transporter activity secondary active transmembrane transporter activity acetate:proton symporter activity secondary active monocarboxylate transmembrane transporter activity active transmembrane transporter activity solute:proton symporter activity monoatomic ion transmembrane transporter activity transporter activity monocarboxylic acid transmembrane transporter activity transmembrane transporter activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity solute:monoatomic cation symporter activity acetate:monoatomic cation symporter activity acetate transmembrane transporter activity carboxylic acid transmembrane transporter activity secondary active transmembrane transporter activity acetate:proton symporter activity secondary active monocarboxylate transmembrane transporter activity active transmembrane transporter activity solute:proton symporter activity monoatomic ion transmembrane transporter activity transporter activity monocarboxylic acid transmembrane transporter activity transmembrane transporter activity symporter activity	succinate transport organic anion transport carboxylic acid transmembrane transport carboxylic acid transport transport succinate transmembrane transport C4-dicarboxylate transport establishment of localization transmembrane transport organic acid transport localization dicarboxylic acid transport cellular process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR047623	Succinate-acetate/proton symporter SatP	Family
A, B, C	IPR047622	GPR1/FUN34/YaaH conserved region	Conserved Site
A, B, C	IPR000791	Acetate transporter GPR1/Ato2/SatP-like	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C	OPM	Transmembrane	Alpha-helical polytopic	Succinate-acetate permease	Acetate uptake transporter

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.