5YR2 | pdb_00005yr2

Structure of cpGFP66BPA

• PDB DOI: https://doi.org/10.2210/pdb5YR2/pdb

• Classification: FLUORESCENT PROTEIN
• Organism(s): Aequorea victoria
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2017-11-08 Released: 2019-01-30 
• Deposition Author(s): Wang, L., Kang, F., Wang, J.
• Funding Organization(s): Ministry of Education (China)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.215 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.168 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.170 (Depositor) 

Starting Model: experimental

Literature

Structure of cpGFP66BPA

Wang, L., Kang, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 55.91 kDa 
• Atom Count: 4,228 
• Modeled Residue Count: 456 
• Deposited Residue Count: 494 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Green fluorescent protein	A, B	247	Aequorea victoria	Mutation(s): 5  Gene Names: gfp
UniProt
Find proteins for A0A059PIQ0 (Aequorea victoria) Explore A0A059PIQ0  Go to UniProtKB:  A0A059PIQ0

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
BF9	A, B	L-PEPTIDE LINKING	C22 H21 N3 O5		THR, PHE, GLY

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.215 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.168 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.170 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.64	α = 90
b = 63.709	β = 101.09
c = 69.159	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-01-30 
Deposition Author(s): Wang, L., Kang, F., Wang, J.

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Funding Organization	Location	Grant Number
Ministry of Education (China)	China	2017YFA0503704

Revision History  

• Version 1.0: 2019-01-30
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description