5YIS

Crystal Structure of AnkB LIR/LC3B complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.201 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Potent and specific Atg8-targeting autophagy inhibitory peptides from giant ankyrins.

Li, J.Zhu, R.Chen, K.Zheng, H.Zhao, H.Yuan, C.Zhang, H.Wang, C.Zhang, M.

(2018) Nat. Chem. Biol. 14: 778-787


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Microtubule-associated proteins 1A/1B light chain 3B
A, B
125Mus musculusMutation(s): 0 
Gene Names: Map1lc3b (Map1alc3, Map1lc3)
Find proteins for Q9CQV6 (Mus musculus)
Go to UniProtKB:  Q9CQV6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ankyrin-2
D, C
27Homo sapiensMutation(s): 0 
Gene Names: ANK2 (ANKB)
Find proteins for Q01484 (Homo sapiens)
Go to Gene View: ANK2
Go to UniProtKB:  Q01484
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.201 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 61.802α = 90.00
b = 66.866β = 90.00
c = 74.148γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHASERphasing
DENZOdata collection
PHENIXrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Research Grants Council (RGC)Hong KongAoE-M09-12

Revision History 

  • Version 1.0: 2018-05-23
    Type: Initial release
  • Version 1.1: 2018-07-04
    Type: Data collection, Database references
  • Version 1.2: 2018-08-01
    Type: Data collection, Database references